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...agaattacactggtcttgtttcaaacttcgctaatctccttccctctttctctttacgaagattttaatctttatgtaaccatcacatgtggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAAGCAAGGAGTATAATGTGGACATGGTCCCCAAG
species | Physcomitrella patens |
transcript | PP1S20_16V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|162196487|gb|FC375440.1|FC375440
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|100423739|gb|BY976524.1|BY976524
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|162180984|gb|FC358638.1|FC358638
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|100352808|gb|BY945459.1|BY945459
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|162187203|gb|FC363153.1|FC363153
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|162229881|gb|FC404334.1|FC404334
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|208387306|gb|DC933057.1|DC933057
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|67571111|gb|BJ943935.1|BJ943935
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAEST: gi|162257732|gb|FC433659.1|FC433659
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
EST: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAG TTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
genomic: ACAGGAATGACTATTATGGCGGAGCTGCTGCATCATTGAACTTGAACCAGgtgagaatga ... ggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCA
ctttctctttacgaagattttaatctttatgtaaccatcacatgtggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAAGCAAGGAGTATAATGTGGACATGGTCCCCAAG
atgtaac putative branch site (score: 11)
aagattttaatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaattacactggtcttgtttcaaacttcgctaatctccttccctctttctctttacgaagattttaatctttatgtaaccatcacatgtggtgtggcagTTGTGGAAAAAATTTAAAGGAGATGAAAAGCCTCCAGCCTTCCTGGGGTCAAGCAAGGAGTATAATGTGGACATGGTCCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgt