1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacagttttgctgttctgccatttgcattctcgtatctgcattatagtccaaggatgtggatgttcggatgctgaactggtcgttttctaagagattgtctgtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG
species | Physcomitrella patens |
transcript | PP1S209_135V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18351887|gb|BJ183939.1|BJ183939
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18373193|gb|BJ204795.1|BJ204795
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18325961|gb|BJ157960.1|BJ157960
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|100360816|gb|BY965915.1|BY965915
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|162194102|gb|FC370277.1|FC370277
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18360367|gb|BJ192429.1|BJ192429
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18369571|gb|BJ201659.1|BJ201659
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18363051|gb|BJ195123.1|BJ195123
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18348401|gb|BJ180449.1|BJ180449
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|208368222|gb|DC931448.1|DC931448
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|67508066|gb|BJ940937.1|BJ940937
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|208353659|gb|DC929702.1|DC929702
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18361973|gb|BJ194040.1|BJ194040
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGEST: gi|18329732|gb|BJ161738.1|BJ161738
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
EST: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTG AGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
genomic: CAGGAAGGCTGGTCATGCATGGAAGACTATCTTGGAAAAGGGATTATCTGgtacagtttt ... gtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAG
gtggatgttcggatgctgaactggtcgttttctaagagattgtctgtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG
ttgtctgtccttcc CT-rich tract
ttttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagttttgctgttctgccatttgcattctcgtatctgcattatagtccaaggatgtggatgttcggatgctgaactggtcgttttctaagagattgtctgtccttccagAGGTGGAGGGCTTGAAGCTTCGACATTTCGTTGATGAACCCACTTATACAGACCTTCACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC