1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gatctttgagaacagtttcgacaaattttctcaattatttaaaattatttatatattgaattttacgttaacggctgaatttgtgattgtggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAATTCCAGTGATCGTGGAGAAGGCGGAGAAAAGCGACATACCAGACATCGA
species | Physcomitrella patens |
transcript | PP1S209_118V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGGAGGGGACGATGGCGAAGAGTTCGTTCAAGCAGGAACATCCTCTGG AGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAAEST: gi|18335090|gb|BJ167108.1|BJ167108
genomic: GTTGGAGGGGACGATGGCGAAGAGTTCGTTCAAGCAGGAACATCCTCTGGgtaagagtgt ... ggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
EST: GTTCAAGCAGGAACATCCTCTGG AGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAAEST: gi|162228521|gb|FC404444.1|FC404444
genomic: GTTCAAGCAGGAACATCCTCTGGgtaagagtgt ... ggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
EST: CGTTCAAGCAGGAACATCCTCTGG AGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAAEST: gi|67578458|gb|BJ950625.1|BJ950625
genomic: CGTTCAAGCAGGAACATCCTCTGGgtaagagtgt ... ggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
EST: GTTGGAGGGGACGATGGCGAAGAGTTCGTTCAAGCAGGAACATCCTCTGG AGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAAEST: gi|18331600|gb|BJ163611.1|BJ163611
genomic: GTTGGAGGGGACGATGGCGAAGAGTTCGTTCAAGCAGGAACATCCTCTGGgtaagagtgt ... ggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
EST: GTTGGAGGGGACGATGGCGAAGAGTTCGTTCAAGCAGGAACATCCTCTGG AGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
genomic: GTTGGAGGGGACGATGGCGAAGAGTTCGTTCAAGCAGGAACATCCTCTGGgtaagagtgt ... ggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
tatttatatattgaattttacgttaacggctgaatttgtgattgtggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAATTCCAGTGATCGTGGAGAAGGCGGAGAAAAGCGACATACCAGACATCGA
cgttaac putative branch site (score: 27)
atatattgaattttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatctttgagaacagtttcgacaaattttctcaattatttaaaattatttatatattgaattttacgttaacggctgaatttgtgattgtggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAATTCCAGTGATCGTGGAGAAGGCGGAGAAAAGCGACATACCAGACATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA