1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgaggatccttgagaacagtgtcgatgggttttcctttttctttacatttctttttttttcccatttcttacagtagaaattgtgattgtggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAATTCCAGTGATCGTGGAGAAGGCGGAGAAAAGCGACATACCAGACATCGA
species | Physcomitrella patens |
transcript | PP1S209_115V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAAGAGCATCATCTGG AGAAGAGGCAGGCAGAAGCTTCCAAGGATCCGTGGCAAGTACCCTGACAGAEST: gi|208381663|gb|DC915529.1|DC915529
genomic: CAAGCAAGAGCATCATCTGGgtatgattct ... ggccttgcagAGAAGAGGCAGGCAGAAGCTT-CAAGGATCCGTGGCAAGTACCCTGACAGA
EST: CNTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGG AGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAAEST: gi|18350949|gb|BJ183000.1|BJ183000
genomic: ATTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGGgtatgattct ... ggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
EST: ATTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGG AGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAAEST: gi|100400686|gb|BY972935.1|BY972935
genomic: ATTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGGgtatgattct ... ggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
EST: ATTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGG AGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
genomic: ATTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGGgtatgattct ... ggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAA
catttctttttttttcccatttcttacagtagaaattgtgattgtggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAATTCCAGTGATCGTGGAGAAGGCGGAGAAAAGCGACATACCAGACATCGA
ttcttac putative branch site (score: 33)
ttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaggatccttgagaacagtgtcgatgggttttcctttttctttacatttctttttttttcccatttcttacagtagaaattgtgattgtggccttgcagAGAAGAGGCAGGCAGAAGCTTCAAGGATCCGTGGCAAGTACCCTGACAGAATTCCAGTGATCGTGGAGAAGGCGGAGAAAAGCGACATACCAGACATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA