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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtattgatagacctctgcttctttctttatttgatctgtagcctatttgaagttgtttgttgttttttgaaagcttatttcattgccaatcgatgcagGTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCATACTGGGTTGTTGCCCAATCTTGCAGCAGTAAATGTATGGGATTGACGGG

Basic information

species Physcomitrella patens
transcript PP1S205_14V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100375646|gb|BY948932.1|BY948932
EST:     GAGGCGGAACAGTCGTCATGTAGCAGGCACTCGACTGAACTTCCA----G                         GTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCAT
genomic: GAGGCGGAACAGTCGTCATGTAGCAGGCACTCGACTGAACTTCCAGGTTGgtatgtttcg ... atcgatgcagGTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCAT
EST: gi|18326906|gb|BJ158906.1|BJ158906
EST:     GAGGCGGAACAGTCGTCATGTAGCAGGCACTCGACTGAACTTCCA----G                         GTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCAT
genomic: GAGGCGGAACAGTCGTCATGTAGCAGGCACTCGACTGAACTTCCAGGTTGgtatgtttcg ... atcgatgcagGTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCAT
EST: gi|100448601|gb|CJ972900.1|CJ972900
EST:     GAGGCGGAACAGTCGTCATGTAGCAGGCACTCGACTGAACTTCCAGGTTG                         GTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCAT
genomic: GAGGCGGAACAGTCGTCATGTAGCAGGCACTCGACTGAACTTCCAGGTTGgtatgtttcg ... atcgatgcagGTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCAT
EST: gi|18327201|gb|BJ159203.1|BJ159203
EST:     GAGGCGGAACAGTCGTCATGTAGCAGGCACTCGACTGAACTTCCA----G                         GTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCAT
genomic: GAGGCGGAACAGTCGTCATGTAGCAGGCACTCGACTGAACTTCCAGGTTGgtatgtttcg ... atcgatgcagGTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgaagttgtttgttgttttttgaaagcttatttcattgccaatcgatgcagGTGATTGCCTGCAGGTACGTGATCATAAATGCAAGTGAAGTGCCTGCTCATACTGGGTTGTTGCCCAATCTTGCAGCAGTAAATGTATGGGATTGACGGG
                   ttttttgaaa  TA-rich tract