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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggttcatcactctctaatttactaggcaaaatgattggatcacataactgcacctaatacaactcagcacgttgagcctagttgtagttcgttatccttttctgtctacatgtttgaagtggtgatttattctggaaatcggagcctgataagtttgattgtgattgtgccagATTTGCCAAGGCTCCAACTGCCGTTCGTACTGATTGGAATGAGTTCACAAAGGATTATTTTTTGCAACGAGAAACGCTTGCTTGCGTTCTGCTTCTTGTT

Basic information

species Physcomitrella patens
transcript PP1S204_50V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162183149|gb|FC360104.1|FC360104
EST:     CACTTTCTTATTAACAAGAAGTGGTACCTGGTTGATCTTCCTGGTTACGG                         ATTTGCCAAGGCTCCAACTGCCGTTCGTACTGATTGGAATGAGTTCACAAA
genomic: CACTTTCTTATTAACAAGAAGTGGTACCTGGTTGATCTTCCTGGTTACGGgtaaaggttc ... attgtgccagATTTGCCAAGGCTCCAACTGCCGTTCGTACTGATTGGAATGAGTTCACAAA
EST: gi|162183148|gb|FC360103.1|FC360103
EST:     CACTTTCTTATTAACAAGAAGTGGTACCTGGTTGATCTTCCTGGTTACGG                         ATTTGCCAAGGCTCCAACTGCCGTTCGTACTGATTGGAATGAGTTCACAAA
genomic: CACTTTCTTATTAACAAGAAGTGGTACCTGGTTGATCTTCCTGGTTACGGgtaaaggttc ... attgtgccagATTTGCCAAGGCTCCAACTGCCGTTCGTACTGATTGGAATGAGTTCACAAA
EST: gi|15327107|gb|BI487587.1|BI487587
EST:     CACTTTCTTATTAACAAGAAGTGGTACCTGGTTGATCTTCCTGGTTACGG                         ATTTGCCAAGGCTCCAACTGCCGTTCGTACTGATTGGAATGAGTTCACAAA
genomic: CACTTTCTTATTAACAAGAAGTGGTACCTGGTTGATCTTCCTGGTTACGGgtaaaggttc ... attgtgccagATTTGCCAAGGCTCCAACTGCCGTTCGTACTGATTGGAATGAGTTCACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtgatttattctggaaatcggagcctgataagtttgattgtgattgtgccagATTTGCCAAGGCTCCAACTGCCGTTCGTACTGATTGGAATGAGTTCACAAAGGATTATTTTTTGCAACGAGAAACGCTTGCTTGCGTTCTGCTTCTTGTT
      atttattct  TA-rich tract