1 5' 3' | 2 5' 3' | 3 5' 3' |
...atggccgttggtgatcatgtagggtcgggaaaggggtagctctcatcgcttcagttctacgagaccaaaagtgggattgataacattgtaaattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACAAGGATGCCATTCTAGCTGCTCTACCAGCTGACCAGAAAGAGAAAGGCAC
species | Physcomitrella patens |
transcript | PP1S204_121V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCNAGCGCAAACCGTATG GTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACAEST: gi|162180458|gb|FC355879.1|FC355879
genomic: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATGgtaagtgaac ... aattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACA
EST: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATG GTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACAEST: gi|208360845|gb|DC934741.1|DC934741
genomic: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATGgtaagtgaac ... aattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACA
EST: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATG GTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTANCCACGGATGACAEST: gi|162244188|gb|FC423765.1|FC423765
genomic: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATGgtaagtgaac ... aattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACA
EST: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATG GTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACAEST: gi|100388062|gb|BY988535.1|BY988535
genomic: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATGgtaagtgaac ... aattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACA
EST: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATG GTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACAEST: gi|162217482|gb|FC393158.1|FC393158
genomic: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATGgtaagtgaac ... aattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACA
EST: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATG GTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACA
genomic: TTTGGAGGACATCTTCTACCTGCTCCGCATCCCCCAGCGCAAACCGTATGgtaagtgaac ... aattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACA
tcgcttcagttctacgagaccaaaagtgggattgataacattgtaaattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACAAGGATGCCATTCTAGCTGCTCTACCAGCTGACCAGAAAGAGAAAGGCAC
tgataac putative branch site (score: 2)
ataacattgtaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggccgttggtgatcatgtagggtcgggaaaggggtagctctcatcgcttcagttctacgagaccaaaagtgggattgataacattgtaaattgtctagGTTCCATGGACAGCGATGTGAAGAAGGCGCTCAAATTAGCCACGGATGACAAGGATGCCATTCTAGCTGCTCTACCAGCTGACCAGAAAGAGAAAGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA