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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgtacctccctccaatatgcggaatcagagcttcttaggttcttgctgtgagtgtttgcatggattgaatttgaagccgtagcaattaagactttgtgggttctttctctgtgtgcagGCTTACAAAATGCGAAATGCTGGGGCAGTTATTCATAGTCATGGTTTAGAGTCTTGCCTTGCCACTATGATCAATCCCACGGCCAAAGAGTTTCGG

Basic information

species Physcomitrella patens
transcript PP1S1_661V6.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_661V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv12s0028g03470.t01 (Vitis vinifera), 3'ss of exon 3
gtcgtacctccctccaatatgcggaatcagagcttcttaggttcttgctgtgagtgtttgcatggattgaatttgaagccgtagcaattaagactttgtgggttctttctctgtgtgcagGCTTACAAAATGCGAAATGCTGGGGCAGTTATTCATAGTCATGGTTTAGAGTCTTGCCTTGCCACTATGATCAATCCCACGGCCAAAGAGTTTCGG
 | |     |  |    ||||| |          ||||      ||| | |   | |||||||    |  | || |||| |||    |     |||       || ||   | | | |||| |||  |||||||  |||||||||| |||||||||||||||||  | ||||||||  |||  || ||||||   ||     | || || ||||| 
attgagaaacaatgttgtatgcagttgtttgatctctt------ttgttttccatttttgcat----tccacttcaagcagtaatggtc----cttc------tcctttcttattttcagGTTTATGAAATGCGTGATGCTGGGGCTGTTATTCATAGTCATGGAATGGAGTCTTGTATTGTAACGATGATCCTCCCTTTCTCAAAGGAATTTCGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaatttgaagccgtagcaattaagactttgtgggttctttctctgtgtgcagGCTTACAAAATGCGAAATGCTGGGGCAGTTATTCATAGTCATGGTTTAGAGTCTTGCCTTGCCACTATGATCAATCCCACGGCCAAAGAGTTTCGG
                                     ttctttctctgtgt  CT-rich tract
                    aattaaga  TA-rich tract