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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

Basic information

species Physcomitrella patens
transcript PP1S198_157V6.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os12g06660.1 (Oryza sativa), 3'ss of exon 2
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                     | || |||    ||   | | ||   || ||    ||  ||  |||   ||   | | | ||    |    |||  |    | ||| | |  |||   | ||   |  | |      | | |||   |   ||||   ||| || |           || ||||| || ||||| || || ||||| || || || ||||| |||||||||||||| || ||  ||||||| || |||||||| || ||||| ||||||||||
--------------------gtcat-catcatcatcaactcaatccaattaaccacctctca-caaatcacaa--caacaaca----acaaaccataccttat-gttcttgcgttcaaaaaattcagtaaacaacaacaacagcaacga---taaaccattgataataataatccaaaattcagGCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTGGGTCGCCCCCGGCACACGGGGGTGATGGTGGGGATGGGGCAGAAGGACG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G478779_T02 (Zea mays), 3'ss of exon 7
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                                    |   |  | ||  ||  ||||||| || |  ||| |||   |        ||||| |       |  |  |  |  |   ||||||||| |||||||| || ||||||||  | ||||| || || ||||||||||| || ||| | ||||||||||| |||||||| ||||| ||||||||||
----------------------------------------------------------------------------------------------------gtgagccaccggtttggtcacatc-tgtt--ctcggtggctgctg-gggccctaaca-------acagcaccaacctcg-gcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G152328_T02 (Zea mays), 3'ss of exon 1
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtc--ttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                        |  ||||  | || | | |  | ||  ||||| | |  |     |    |    | ||      ||||| |       |     |  |  |   ||||||||| |||||||| || ||||||||  | ||||| || || ||||||||||| || ||| | ||||||||||| |||||||| ||||| ||||||||||
---------------------------------------------------------------------------------------gtaagcca--ccggtttggtcacatctgttcttgagaatgcaaggttctcggtggctgctggggccctaaca-------acaacaccaacctcg-gcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM5G859691_T01 (Zea mays), 3'ss of exon 7
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtc--ttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                        |  ||||  | || | | |  | ||  ||||| | |  |     |    |    | ||      ||||| |       |  |  |  |  |   ||||||||| |||||||| || ||||||||  | | ||| || || ||||||||||| || ||| | ||||||||||| |||||||| ||||| ||||||||||
---------------------------------------------------------------------------------------gtaagcca--ccggtttggtcacatctgttcttgagaatgcaaggttctcggtggctgctggggccctaaca-------acagcaccaacctcg-gcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGTCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G478779_T01 (Zea mays), 3'ss of exon 5
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                               ||  ||   || |        |||        | | || |||||  |||| || | |   | ||  ||  |||||||   || |||| |||   |        ||||| |       |  |  |  |  |   ||||||||| |||||||| || ||||||||  | ||||| || || ||||||||||| || ||| | ||||||||||| |||||||| |               
----------------------------------------------tatccagcccctcgtc------tgcgacaacggaac-tggcatgg-tcaaggtgagcc---accggtttggtcacatct--gt-tctcggtggctgctg-gggccctaaca-------acagCACCAACCTCG-GCAGGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGA---------------

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G047055_T01 (Zea mays), 3'ss of exon 2
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacct--aaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                                            |   || |  |  ||  | || || |||   |   |||  |  ||  | |||      |     |  | ||   ||||||||| ||||| || || ||||||||  | ||||| || || |||||||| || || ||| | ||||| ||||||||||| || ||||| |||||||| |
-----------------------------------------------------------------------------------------------------------gtaagctaccgccgat--ttgt-tccctgaactaaacacttattcttcagaatcccctaacaacaccaacttctggcagGCTGGGTTCGCCGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTTGGGCGCCCGCGCCACACCGGTGTGATGGTGGGGATGGGGCAGAAGGATG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 2
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                                              |||  |  |    | ||  |  |     | |   ||    || || |||    || | |  |  | |  |  |||||||||| ||||| ||||| || ||  | || || || || ||||| || || || ||  | ||||||||||| ||||| || ||||||||||||||||
--------------------------------------------------------------------------------------------------------------gtcagcccccgtccctg--actttgacaacctttactt--ccaaatatgccactaat-tatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G067985_T06 (Zea mays), 3'ss of exon 2
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                |  ||  |       |   |  | || |  |||  |  |    | ||  |  |     | |   ||    || || |||    || | |  |  | |  |  |||||||||| ||||| ||||| || ||  | || || || || ||||| || || || ||  | ||||||||||| ||||| || ||||||||||||||||
-------------------------------------------------------------------------------tgtctgcgacaatggcactggaatggtcaaggtcagcccccgtccctg--actttgacaacctttactt--ccaaatatgccactaat-tatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA18G52780.1 (Glycine max), 3'ss of exon 1
gtatgatattaactgt-tttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcg-tggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
              ||   |||||   | ||||| ||     ||| || ||||    ||| |  | | |      |||      | | |||||              |||| | ||    ||||   || ||  | |||||          |  | |||  ||   ||||     | | | || |||||||||| ||||||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| || ||||| || || || |
--------------gtacatgatggatcttttgtttttgtattatttgttgaataaacttactgtcatac-----tcttgttggttttatggg------------aatatcatttt----acattaatgttacttttgtga----------atttgaaaaatta--attgcaacaaatatttgtagGCTGGTTTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcg-tggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                 |  |||| | || |    | |   | |||  | || | | |   |||  ||    |   ||   | | | || ||       ||    | ||       || ||||   || ||  |||||||          |  | |||  ||   ||||    || | | || ||||||| || ||||||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| || ||||| || || || |
----------------gtacatgagggatct----tttgtttgtgtattaaatttgttgataatgtaactttgacata---ctttttattggttttatgggaatatcat-------tttacattaatgttacttctgtga----------atttgaaaaatta--attgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA09G17040.1 (Glycine max), 3'ss of exon 1
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                    ||  ||      | |   |  | ||  |    ||     ||||| ||            |  |     | |    ||   ||| ||   | ||| |||||||||| || ||||||||||| || ||  | |||||||| || ||||| ||||| || ||  | ||||||||||||||||| || ||||| || ||||| |
-----------------------------------------------------------------------------------agttttgtcttttggtttttgatgatactagattttgacccgtgggatacaaagagagaactaattgggtgagtacttcaaattatgttcaattt-tgcagGCTGGATTTGCTGGAGATGATGCTCCAAGGGCCGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAGGATG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA19G00850.1 (Glycine max), 3'ss of exon 1
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                         |  |  |       | || |||| |  | |   ||| || |  | | |   ||  |      |      |||   ||||    |  | | | ||||| || || || |||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| |||||||| ||||| || |
-----------------------------------------------------------------------------------------gtacagaatgcacactttttcgtttgatgcttctcgagggaattgttttg-cgttaacttttccccttcgttctaattgcaatgtgtcttttcagGCAGGATTTGCAGGAGATGATGCCCCACGTGCTGTGTTTCCTAGCATTGTTGGTCGTCCTCGTCACACTGGTGTGATGGTTGGTATGGGCCAGAAAGATG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                        || |  |  |||  |  |||   |  | |     ||      ||| |||  |        ||    |  || |  |  | |  | || |||  ||||||||||| ||||| ||||| |||||  | || ||||| || || || || || || || |||||||||||||| ||||| |||||||| ||||| || |
---------------------------------------------------------------------------------------gtgagttagactgtttatttag-atactgtatggttctaaccttctttgttgtacatgtgtaagactac-tgatcatgatttttgtatatta-acagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 3
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                        ||           |  | |    |  ||     || | || || ||  |    || |       || ||      ||   |||  | |   | || |||   || |||||||||||| || || || ||||| || ||| | || |||||||| || || ||||| ||||| |||||||||||||| ||||| || ||||| || || || |
------------------------------------------------------------------------gtctgttgtttctttcttgcttgatatgcagatttgttgtgttgtttgc----tgctcctcaaatgctcaatttgaa---taagctttccatgttatgct--ttatatgcagGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggt-attgtg-cggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                          || |     |  | |||||   | |||| |  |  |||   |  | |   |  |       ||  |  |  |||| |  |   ||  | |   |||| ||   | |  ||||||||| || ||||| ||||| ||||| ||||| ||||| ||   ||||||||| |||||  | ||||| |||||||||||||| ||||| ||||||    
--------------------------------------------------------------------------tcca---tttaacttgggc---gttgggcc--tggcgtgggccccgcgctgcagcgc----gttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 1
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaa--aatgttggtattgtgcggat-tttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                                                                    |  |     ||| |     ||     || ||| |   | | |  | ||  |||||||||| || || ||||| || || ||| | ||||||||||| ||||| ||||| ||||| | |||||| || || ||||| || ||||| |||||||| |
-----------------------------------------------------------------------------------------------------------------------------------gtgcgctcctggcgcggtttcttgtggattttgatccggggggtgtgttcttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

upper sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaa--aatgttggtattgtgcggat-tttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                                                                                                    |  |     ||| | |   ||     || ||| |   | | |  | ||| |||||||||| || || ||||| || || ||| | ||||||||||| ||||| ||||| ||||| | |||||| || || ||||| || ||||| |||||||| |
-----------------------------------------------------------------------------------------------------------------------------------gtgcgctcctggcgcgatttcttgtggattttgatccggggggtgtgtttttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18352659|gb|BJ184714.1|BJ184714
EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGACAATGGATCCGGAATGGTGAAG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGACAATGGATCCGGAATGGTGAAGgtatgatatt ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
EST: gi|18366967|gb|BJ199047.1|BJ199047
EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGACAATGGATCCGGAATGGTGAAG                         GCTGGNTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGACAATGGATCCGGAATGGTGAAGgtatgatatt ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
EST: gi|208389210|gb|DC933238.1|DC933238
EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGACAATGGATCCGGAATGGTGAAG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGACAATGGATCCGGAATGGTGAAGgtatgatatt ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                    acctaaa  putative branch site (score: 3)
                       taaaatgtt  TA-rich tract