1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaatgccgtttccagtgagcctatgcttggttactctttacagcattgcatcctgtgacggtggttttctcattaagacgacttcttctactgtttcagAATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAG
species | Physcomitrella patens |
transcript | PP1S194_4V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGAGAGTGGCAGCTTCTGGTTTCCCGCCCCAGTCTACAACCGAGAG AATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTACEST: gi|162197915|gb|FC373956.1|FC373956
genomic: CTTTGGAGAGTGGCAGCTTCTGGTTTCCCGCCCAAGTCTACAACCGAGAGgtgcgttctt ... actgtttcagAATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTAC
EST: CTTTGGAGAGTGGCAGCTTCTGGTTTCCCGCCCAAGTCTACAACCGAGAG AATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTACEST: gi|67569511|gb|BJ942335.1|BJ942335
genomic: CTTTGGAGAGTGGCAGCTTCTGGTTTCCCGCCCAAGTCTACAACCGAGAGgtgcgttctt ... actgtttcagAATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTAC
EST: CTTTGGAGAGTGGCAGCTTCTGGTTTCCCGCCCAAGTCTACAACCGAGAG AATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTAC
genomic: CTTTGGAGAGTGGCAGCTTCTGGTTTCCCGCCCAAGTCTACAACCGAGAGgtgcgttctt ... actgtttcagAATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTAC
attgcatcctgtgacggtggttttctcattaagacgacttcttctactgtttcagAATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAG
cttcttctactgtttc CT-rich tract
tcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatgccgtttccagtgagcctatgcttggttactctttacagcattgcatcctgtgacggtggttttctcattaagacgacttcttctactgtttcagAATGGACATGTAGGCTTCATGCTGTCATGTTATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG