1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcacaagcaattacgtgccttttctctttgctggcaattccgtggtgctgccggaagatttgaaaatttgactccgggagaattaattggacgtgtgcagGTAGCTTTAAAGTTTGTGTACCTCGGTATTGGAGCTGCAGTTGCATCATACTTGG
species | Physcomitrella patens |
transcript | PP1S188_78V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGTAACAACCAAACTGACACAAGTGTGCTGGTTGATCAAGTCTCCAAG GTAGCTTTAAAGTTTGTGTACEST: gi|41107777|gb|BJ175972.1|BJ175972
genomic: TTGGTAACAACCAAACTGACACAAGTGTGCTGGTTGATCAAGTCTCCAAGgtgcgctttt ... acgtgtgcagGTAGCTTTAAAGTTTGTGTAC
EST: TTGGTAACAACCAAACTGACACAAGTGTGCTGGTTGATCAAGTCTCCAAG GTAGCTTTAAAGTTTGTGTACCTCGGTATTGGAGCTGCAGTTGCATCATAC
genomic: TTGGTAACAACCAAACTGACACAAGTGTGCTGGTTGATCAAGTCTCCAAGgtgcgctttt ... acgtgtgcagGTAGCTTTAAAGTTTGTGTACCTCGGTATTGGAGCTGCAGTTGCATCATAC
tgctgccggaagatttgaaaatttgactccgggagaattaattggacgtgtgcagGTAGCTTTAAAGTTTGTGTACCTCGGTATTGGAGCTGCAGTTGCATCATACTTGG
aattaat putative branch site (score: 1)
aagatttgaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacaagcaattacgtgccttttctctttgctggcaattccgtggtgctgccggaagatttgaaaatttgactccgggagaattaattggacgtgtgcagGTAGCTTTAAAGTTTGTGTACCTCGGTATTGGAGCTGCAGTTGCATCATACTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-cacaagc
- - - - - - - - - - - - - - - - - - - - - - -tgctgcc