1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaagatctctctcatcctacgatggaatctagtggtgcagaccaccggatttctacgtatgctacacttagcccactagttgtgaatttctgtgagaacttgtaagtcttatcgcggggtgagcctactctgaatgtgtgcaattcttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACGCTCGCAAGACGTATACGGATTCCATTGCTTACTGGCTGGTGAAGTCGT
species | Physcomitrella patens |
transcript | PP1S183_11V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100403550|gb|BY954982.1|BY954982
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100356990|gb|BY983638.1|BY983638
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATEST: gi|162220974|gb|FC396159.1|FC396159
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGAT
EST: AGTCCAACACAAGGAGGACGGGACCTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCCATCGATT-AGAGAAGACCEST: gi|100388201|gb|BY951803.1|BY951803
genomic: AGTCCAACACAAGGAGGACGGGAC-TCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACC-ATCGATTTAGAGAAGACC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATNCCGATGTCACCATCGAEST: gi|100352682|gb|BY945394.1|BY945394
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGA
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGNAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|162278227|gb|FC454462.1|FC454462
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|162280319|gb|FC456336.1|FC456336
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGEST: gi|100370806|gb|BY948525.1|BY948525
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAG
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGNAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100384733|gb|BY950723.1|BY950723
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|208353256|gb|DC913568.1|DC913568
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGAEST: gi|162241498|gb|FC415478.1|FC415478
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGA
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTEST: gi|100430350|gb|BY959825.1|BY959825
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTT
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100382874|gb|BY986952.1|BY986952
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AGTCCAACACAAGGAGGACGGGACTCCCTTGGAA-TGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100399415|gb|BY954360.1|BY954360
genomic: AGTCCAACACAAGGAGGACGGGACTCC-TTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACC-ACEST: gi|162270313|gb|FC447325.1|FC447325
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|162168864|gb|FC345338.1|FC345338
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|162275512|gb|FC451579.1|FC451579
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|162259694|gb|FC436518.1|FC436518
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100385424|gb|BY969761.1|BY969761
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AGTC-AACACA-GGNAGGACGGGACTCCTTGNAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAEST: gi|100417956|gb|BY993267.1|BY993267
genomic: AGTCCAACACAAGG-AGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGA
EST: AGTCCAACANCA-GGAGGACGGGACTCCTTGNAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCEST: gi|100388373|gb|BY951975.1|BY951975
genomic: AGTCCAACA-CAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTC
EST: AAGTCAAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAEST: gi|100444330|gb|BY982359.1|BY982359
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGA
EST: AAGTCCAACACAGGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100376718|gb|BY949431.1|BY949431
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AGTCCNAACACA-GGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAEST: gi|100355861|gb|BY946075.1|BY946075
genomic: AGTCC-AACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAA
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGA-GACCCACEST: gi|162228517|gb|FC404141.1|FC404141
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100410681|gb|BY992216.1|BY992216
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|208347020|gb|DC909332.1|DC909332
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGAEST: gi|100446774|gb|CJ971073.1|CJ971073
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGA
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTEST: gi|100389101|gb|BY952305.1|BY952305
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATT
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|162172123|gb|FC347986.1|FC347986
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|100352761|gb|BY945435.1|BY945435
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACEST: gi|18347854|gb|BJ179901.1|BJ179901
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAEST: gi|162199620|gb|FC373272.1|FC373272
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTA
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGEST: gi|100404260|gb|BY955336.1|BY955336
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAG
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGAACCACEST: gi|162197805|gb|FC373599.1|FC373599
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
EST: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACG CCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
genomic: AAGTCCAACACAAGGAGGACGGGACTCCTTGGAAATGGACGTGCTTCACGgtaaagatct ... ttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCAC
gtaagtcttatcgcggggtgagcctactctgaatgtgtgcaattcttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACGCTCGCAAGACGTATACGGATTCCATTGCTTACTGGCTGGTGAAGTCGT
ttcttttgt CT-rich tract
aattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagatctctctcatcctacgatggaatctagtggtgcagaccaccggatttctacgtatgctacacttagcccactagttgtgaatttctgtgagaacttgtaagtcttatcgcggggtgagcctactctgaatgtgtgcaattcttttgtacagCCGCACGAGACGTACTATCCCGATGTCACCATCGATTTAGAGAAGACCCACGCTCGCAAGACGTATACGGATTCCATTGCTTACTGGCTGGTGAAGTCGT
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