1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcatttgttattgatgagattcaattttcatctccctcatagttcatagttcatttcgttcagtactttgctgacatttatttccttgaaatttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTATCTTATGTACGAGAAAAAACAAGGGAAAGAATCGTACTGGTATCCATA
species | Physcomitrella patens |
transcript | PP1S181_117V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|208384895|gb|DC907508.1|DC907508
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162161114|gb|FC336462.1|FC336462
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGNGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162258113|gb|FC433895.1|FC433895
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162221408|gb|FC397217.1|FC397217
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162163592|gb|FC339502.1|FC339502
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162228257|gb|FC404973.1|FC404973
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162162497|gb|FC339215.1|FC339215
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162177904|gb|FC355154.1|FC355154
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162190740|gb|FC367002.1|FC367002
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162152120|gb|FC328710.1|FC328710
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTEST: gi|162205221|gb|FC380903.1|FC380903
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
EST: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAG CTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
genomic: CAAGTCCCTTGTTGTTACACTGGAGAGAGTCTTGGGAGACGAAACCATAGgtgcgaacat ... atttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTT
atagttcatttcgttcagtactttgctgacatttatttccttgaaatttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTATCTTATGTACGAGAAAAAACAAGGGAAAGAATCGTACTGGTATCCATA
tgctgac putative branch site (score: 21)
tttctgc putative PPT
acatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttgttattgatgagattcaattttcatctccctcatagttcatagttcatttcgttcagtactttgctgacatttatttccttgaaatttctgcagCTGAATTATTGACCACGAACAAGCTCTCCGAACTTGCTTGTCTAGCACTTTATCTTATGTACGAGAAAAAACAAGGGAAAGAATCGTACTGGTATCCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA