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...gtgtctcgagtgttaacaaaccatgattctgctaagccaaggtctattaagccgttcatatttgcactgttcacttaccaaatgtttctgtggtttgaagGAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAAAAGAAGTATCGTTATGCTAAG
species | Physcomitrella patens |
transcript | PP1S180_110V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAAACCTAATGTTTGTCACCCTTCACAACAGGAGGTGCTCGATCAAATG GAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAAEST: gi|18355758|gb|BJ187817.1|BJ187817
genomic: TTAAACCTAATGTTTGTCACCCTTCACAACAGGAGGTGCTCGATCAAATGgtgagtggaa ... tggtttgaagGAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAA
EST: TTAAACCTAATGTTTGTCACCCTTCACAACAGGAGGTGCTCGATCAAATG GAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAAEST: gi|100423882|gb|BY976572.1|BY976572
genomic: TTAAACCTAATGTTTGTCACCCTTCACAACAGGAGGTGCTCGATCAAATGgtgagtggaa ... tggtttgaagGAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAA
EST: TTAAACCTAATGTTTGTCACCCTTCACAACAGGAGGTGCTCGATCAAATG GAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAAEST: gi|100437096|gb|BY961349.1|BY961349
genomic: TTAAACCTAATGTTTGTCACCCTTCACAACAGGAGGTGCTCGATCAAATGgtgagtggaa ... tggtttgaagGAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAA
EST: TTAAACCTAATGTTTGTCACCCTTCACAACAGGAGGTGCTCGATCAAATG GAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAA
genomic: TTAAACCTAATGTTTGTCACCCTTCACAACAGGAGGTGCTCGATCAAATGgtgagtggaa ... tggtttgaagGAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAA
attaagccgttcatatttgcactgttcacttaccaaatgtttctgtggtttgaagGAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAAAAGAAGTATCGTTATGCTAAG
cacttac putative branch site (score: 10)
tttctgt putative PPT
ttcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtctcgagtgttaacaaaccatgattctgctaagccaaggtctattaagccgttcatatttgcactgttcacttaccaaatgtttctgtggtttgaagGAGAATGATGGTAACAAGGTTGTGCGAGAAATAATCCATGGGCCTTGTAAAAAGAAGTATCGTTATGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT