1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctacctagacgattttgggataaggggttgactacatcaatatctatttttaaatactgctgatcttgtatgcctttttcatggtcgtttctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAGTGTGTAATGCTTCGAAG
species | Physcomitrella patens |
transcript | PP1S177_18V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAG AAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAEST: gi|162159609|gb|FC335787.1|FC335787
genomic: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAGgcatgaaacc ... ctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCA
EST: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAG AAAGGAATTTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAEST: gi|162233422|gb|FC410219.1|FC410219
genomic: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAGgcatgaaacc ... ctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCA
EST: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAG AAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAEST: gi|67574657|gb|BJ947481.1|BJ947481
genomic: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAGgcatgaaacc ... ctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCA
EST: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAG AAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAEST: gi|67698071|gb|BJ958304.1|BJ958304
genomic: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAGgcatgaaacc ... ctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCA
EST: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAG AAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAEST: gi|162251279|gb|FC428558.1|FC428558
genomic: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAGgcatgaaacc ... ctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCA
EST: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAG AAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAEST: gi|162238255|gb|FC414523.1|FC414523
genomic: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAGgcatgaaacc ... ctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCA
EST: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAG AAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCA
genomic: GCTCCATAGAAGTCATCATCGCACAAAGCACCGGGTTGGCTGAAGTTCAGgcatgaaacc ... ctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCA
atttttaaatactgctgatcttgtatgcctttttcatggtcgtttctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAGTGTGTAATGCTTCGAAG
tgctgat putative branch site (score: 17)
tcgtttctttatcc putative PPT
tttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacctagacgattttgggataaggggttgactacatcaatatctatttttaaatactgctgatcttgtatgcctttttcatggtcgtttctttatccagAAAGGAATCTACGATGCGGAGAGGAAGATGGTGCAACTACAGAGTGATGCAGTGTGTAATGCTTCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG