1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacacccgatttaagctaaaaatttgtctttctttgttgtggattcgaattcattctcttactgtttttctttctcgctgtggacatgtgagcaattactaagtaactgagatcgatctcctgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGGGGAAGATGTAGTTCATCCTTTGAAGGTTTCATTGGAAGATCTTTACAA
species | Physcomitrella patens |
transcript | PP1S174_37V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|162153711|gb|FC329114.1|FC329114
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|162152004|gb|FC327918.1|FC327918
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|162197042|gb|FC375241.1|FC375241
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|162180092|gb|FC356657.1|FC356657
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|100431293|gb|BY960124.1|BY960124
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|208373708|gb|DC936535.1|DC936535
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|67574368|gb|BJ947192.1|BJ947192
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAEST: gi|208358355|gb|DC934548.1|DC934548
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGA
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGEST: gi|162213966|gb|FC390165.1|FC390165
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|162151466|gb|FC326971.1|FC326971
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|100407617|gb|BY991778.1|BY991778
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|162173994|gb|FC350509.1|FC350509
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|208353142|gb|DC910151.1|DC910151
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGNA-GTGGGANGGGTGGTAEST: gi|208359865|gb|DC934866.1|DC934866
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTA
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGANGGGTGGTAGCAGGCGACAAAGGAGAEST: gi|100441954|gb|BY981177.1|BY981177
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGA
EST: TTTGACATCTTCGAGTCATTCTTTGGCGGGGGTGGGAAGCCCATTTGGAG ATTCATTTCCGGGCGGAAGTGGGAAGGGGTGGTAGCAGGCGACAAAGGAGAEST: gi|162263312|gb|FC439094.1|FC439094
genomic: TTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGG-AAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGA-GGGGTGGTAGCAGGCGACAAAGGAGA
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|162166513|gb|FC343210.1|FC343210
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|100392962|gb|BY989694.1|BY989694
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG AT-CATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAEST: gi|100384322|gb|BY969453.1|BY969453
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCA
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGEST: gi|67569005|gb|BJ941829.1|BJ941829
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAAGTGGGAGGGGTGGTAGCAGGCGAEST: gi|100396849|gb|BY953858.1|BY953858
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAA-GTGGGAGGGGTGGTAGCAGGCGA
EST: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAG ATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
genomic: ATTTGACATCTTCGAGTCATTCTTTGGCGGTGGTGGAAGCCCATTTGGAGgtacacccga ... tgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAG
gctgtggacatgtgagcaattactaagtaactgagatcgatctcctgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGGGGAAGATGTAGTTCATCCTTTGAAGGTTTCATTGGAAGATCTTTACAA
tctcct CT-rich tract
aattactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacccgatttaagctaaaaatttgtctttctttgttgtggattcgaattcattctcttactgtttttctttctcgctgtggacatgtgagcaattactaagtaactgagatcgatctcctgattgccagATTCATTTCCTGGCGGAAGTGGGAGGGGTGGTAGCAGGCGACAAAGGAGAGGGGAAGATGTAGTTCATCCTTTGAAGGTTTCATTGGAAGATCTTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA