1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttgttctttttttttcattggtttcttgtagaatccatgagcttagcctattcagaattttagacggactggatgtaaagccatgcgtttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAG
species | Physcomitrella patens |
transcript | PP1S172_91V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCEST: gi|208344588|gb|DC909147.1|DC909147
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCEST: gi|100402089|gb|BY973211.1|BY973211
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG GAAGAAAAACATGTGGTGATTGACCCCGCCACCAATGAGGAACTTGGGGTCEST: gi|18368213|gb|BJ200298.1|BJ200298
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCEST: gi|162149918|gb|FC326241.1|FC326241
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCEST: gi|100354693|gb|BY983518.1|BY983518
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: CACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCNTC-AAG GAAGAAAAACATGTGGTGATTGACCEST: gi|100372203|gb|BY985484.1|BY985484
genomic: CACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTC-TCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACC
EST: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCEST: gi|100384950|gb|BY969685.1|BY969685
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCEST: gi|18355511|gb|BJ187570.1|BJ187570
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCEST: gi|100380014|gb|BY968803.1|BY968803
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: CACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCCTCTCCA-G AAAGAAAA-CATGTGGTGATTGACCCCGTCACCAATGAGAAACT
genomic: CACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCC-TCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACT
tagcctattcagaattttagacggactggatgtaaagccatgcgtttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAG
tttgttttc CT-rich tract
tattcagaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgttctttttttttcattggtttcttgtagaatccatgagcttagcctattcagaattttagacggactggatgtaaagccatgcgtttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA