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...tacttcaatggtcgaaatcatgcaatgttcatgccacatttaatgttggtgttatggttcttctaattgtgttttaatgtccgaggaacaattcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGGAGGGTGGTGGTGCAAAGCTTGGAGATAATGGCCTTCAAAGCTTGCGAG
species | Physcomitrella patens |
transcript | PP1S169_73V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|100379420|gb|BY986628.1|BY986628
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18348253|gb|BJ180300.1|BJ180300
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|162266559|gb|FC442790.1|FC442790
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GGAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|162160839|gb|FC337661.1|FC337661
genomic: GGAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|162183681|gb|FC359909.1|FC359909
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18343267|gb|BJ175305.1|BJ175305
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18353255|gb|BJ185310.1|BJ185310
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTANTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|67702120|gb|BJ962353.1|BJ962353
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTANCACGAGGEST: gi|18349577|gb|BJ181627.1|BJ181627
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18350303|gb|BJ182354.1|BJ182354
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18344551|gb|BJ176592.1|BJ176592
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18344205|gb|BJ176244.1|BJ176244
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18364666|gb|BJ196739.1|BJ196739
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18328479|gb|BJ160484.1|BJ160484
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|18352311|gb|BJ184365.1|BJ184365
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGEST: gi|100422342|gb|BY976327.1|BY976327
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
EST: GAGCAAAATTCGCGTCACCTGCAAG GTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
genomic: GAGCAAAATTCGCGTCACCTGCAAGgtaaggcctg ... attcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGG
ttggtgttatggttcttctaattgtgttttaatgtccgaggaacaattcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGGAGGGTGGTGGTGCAAAGCTTGGAGATAATGGCCTTCAAAGCTTGCGAG
taattgtgttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttcaatggtcgaaatcatgcaatgttcatgccacatttaatgttggtgttatggttcttctaattgtgttttaatgtccgaggaacaattcatgcagGTGAATGACGAGTATGTAGTTGTCAAGGACATGCCGGTGCCTAGCACGAGGGAGGGTGGTGGTGCAAAGCTTGGAGATAATGGCCTTCAAAGCTTGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT