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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggattgttagaaggtttttgtaggggaggggtttgccaagcgatttttttttttttttttttttttttggttttgattcgttcctgttttgtatctgcagTGTCGACTTGCTGGATTGACGTACAGAGGTATATTCACAGCAGATATATGCATGCAATGGAACAATGGAGTAGTTGTGCGACACAATATTTCTTATGGCA

Basic information

species Physcomitrella patens
transcript PP1S169_131V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18372255|gb|BJ203857.1|BJ203857
EST:     TGAAAGACCTAGGTAGCCAAGCATTAGATCAGCGCCTTTTACCATCCGAA                         TGTCGACTTGCTGGATTGACGTACAGAGGTATATTCACAGCAGATATATGC
genomic: TGAAAGACCTAGGTAGCCAAGCATTAGATCAGCGCCTTTTACCATCCGAAgtaagcattc ... gtatctgcagTGTCGACTTGCTGGATTGACGTACAGAGGTATATTCACAGCAGATATATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttttttttttttttttggttttgattcgttcctgttttgtatctgcagTGTCGACTTGCTGGATTGACGTACAGAGGTATATTCACAGCAGATATATGCATGCAATGGAACAATGGAGTAGTTGTGCGACACAATATTTCTTATGGCA
                         ttttgat  putative branch site (score: 4)
 tttttttttttttttt  TA-rich tract