1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acgtagttgttaatcatacaatcaaatgacattttgtttagtttagctaatttgataagaagaatattaatctgcaatttactgaggactttttctgcagGATTACCACAACGTTACCGAGATTCTGTACGCACTATTCAACCAGGGCTTCCCCTTTTTCTGTACAATTATACTACACACCAGCTTCATGGGATATTCGA
species | Physcomitrella patens |
transcript | PP1S168_104V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGCAATAATGACACCATGCAAGAGGACCTTAAACGCCAGCTCTTCG GATTACCACCAACGTTACCGAGATTTCTGTACGCACTATTCAACCAGGGCTEST: gi|22132955|gb|BQ827456.1|BQ827456
genomic: TGTTTGCAATAATGACACCATGCAAGAGGACCTTAAACGCCAGCTCTTCGgtacgttgca ... ttttctgcagGATTACCAC-AACGTTACCGAGATT-CTGTACGCACTATTCAACCAGGGCT
EST: TGTTTGCAATAATGACACCATGCAAGAGGACCTTAAACGCCAGCTCTTCG GATTACCACAACGTTACCGAGATTCTGTACGCACTATTCAACCAGGGCTTC
genomic: TGTTTGCAATAATGACACCATGCAAGAGGACCTTAAACGCCAGCTCTTCGgtacgttgca ... ttttctgcagGATTACCACAACGTTACCGAGATTCTGTACGCACTATTCAACCAGGGCTTC
gctaatttgataagaagaatattaatctgcaatttactgaggactttttctgcagGATTACCACAACGTTACCGAGATTCTGTACGCACTATTCAACCAGGGCTTCCCCTTTTTCTGTACAATTATACTACACACCAGCTTCATGGGATATTCGA
tattaat putative branch site (score: 6)
ctttttctgc putative PPT
tttgataagaagaata TA-rich tract