1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taggttgcagcatttggcatgactttctttgagtgctaaatttggctagctgatttgaaaactttccttatagctaattgaggcggttcgctgtaatcagTATTGAGATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGGAACCACAGCTCCAGGTCTACCTTACGTGGATGAAGCAATTGCAAATGCT
species | Physcomitrella patens |
transcript | PP1S166_97V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGTCACTCTTGTTGGCCCGGATGGCAATGATGTTGCTATCCTTCGCAA TATTGAGATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGGEST: gi|162280465|gb|FC456378.1|FC456378
genomic: GCTGTCACTCTTGTTGGCCCGGATGGCAATGATGTTGCTATCCTTCGCAAgtatgtcact ... ctgtaatcagTATTGAGATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGG
EST: GCTGTCACTCTTGTTGGCCCGGATGGCAATGATGTTGCTATCCTTCGCAA TATTGAAATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGGEST: gi|162170567|gb|FC347687.1|FC347687
genomic: GCTGTCACTCTTGTTGGCCCGGATGGCAATGATGTTGCTATCCTTCGCAAgtatgtcact ... ctgtaatcagTATTGAGATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGG
EST: GCTGTCACTCTTGTTGGCCCGGATGGCAATGATGTTGCTATCCTTCGCAA TATTGAGATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGG
genomic: GCTGTCACTCTTGTTGGCCCGGATGGCAATGATGTTGCTATCCTTCGCAAgtatgtcact ... ctgtaatcagTATTGAGATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGG
ctagctgatttgaaaactttccttatagctaattgaggcggttcgctgtaatcagTATTGAGATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGGAACCACAGCTCCAGGTCTACCTTACGTGGATGAAGCAATTGCAAATGCT
agctaat putative branch site (score: 7)
atttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggttgcagcatttggcatgactttctttgagtgctaaatttggctagctgatttgaaaactttccttatagctaattgaggcggttcgctgtaatcagTATTGAGATTTACAAGCACAACAAGGAAGAGCGGATTGCTCGCACTTGGGGAACCACAGCTCCAGGTCTACCTTACGTGGATGAAGCAATTGCAAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - -tgcagca