Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtcataagattctgaaagtcgtgagcttggatcttgtgtaaagtttgtggagtgatgagttcaatctggcaaccgtactggatgatttgaatacgcagACCCGGAAGCCGAGGTGATCGCGTTGTCACCAAAAACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGTTTTCAGCGCGACCAAAA

Basic information

species Physcomitrella patens
transcript PP1S165_3V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S165_3V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 1
tggtcataagattctgaaagtcgtgagcttggatcttgtgtaaagtttgtggagtgatgagttcaatctggcaaccgtactggatgatttgaatacgcagACCCGGAAGCCGAGGTGATCGCGTTGTCACCAAAAACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGTTTTCAGCGCGACCAAAA
      ||  |     ||| || |    ||  |     |    |   | | | ||  |   |   || |  |     ||  || | |||        |||| ||||| || |||||||| ||  |||| || || ||  ||||||||||||| || |||||||| |||||||| |||||||| |||||| | ||||| ||
-----gtaccacaaaaaaattcattttttttcaatcaatcatcatcatcttgtgttgtttttcttattttactttt-tatggggttatt--------cagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA

upper sequence: PP1S165_3V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT5G66730.1 (Arabidopsis thaliana), 3'ss of exon 1
tggtcataagattctgaaagtcgtgagcttggatcttgtgtaaagtttgtggagtgatgagttcaatctggcaaccgtactggatgatt-tgaatacgcagACCCGGAAGCCGAGGTGATCGCGTTGTCACCAAAAACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGTTTTCAGCGCGACCAAAA
           |||| |||      | |||   | || | |    ||| ||   |    | ||     |   |   || ||   ||||| |  | |  |||| || || || || ||||| || |||||||| |||||| | ||||| |||||||||||||| |||||||| |||||||| |||||||| || ||||| ||
-------gtacttctcaaaaatccaaactt---ttttttttctgttttttgagtttgaaattttctgtttttagttgttctcactgattgtctaaattcagATCCAGACGCTGAAGTGATAGCTTTGTCACCTAAAACACTTATGGCAACGAATCGATTCGTTTGCGAAATCTGTAACAAAGGTTTTCAACGTGACCAGAA

upper sequence: PP1S165_3V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv18s0001g12220.t01 (Vitis vinifera), 3'ss of exon 1
---tggtcataagattctgaaagtcgtgagcttggatcttgtgtaaagtttgtggagtgatgagttcaatctggcaaccgtactggatgatttgaatacgcagACCCGGAAGCCGAGGTGATCGCGTTGTCACCAAAAACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGTTTTCAGCGCGACCAAAA
    | | | || |  || ||     ||    |  |||||  ||||| | | |              |    |   |||||  ||  || || || |  ||||| ||||| || ||||||||||| |||||||| |||||  | ||||| ||||| || ||||| ||||| || || ||||| || || || |||||||| ||
gtaagataagaaaaccctaaattcaatg----taaatcttaggtaaattctttccctcccaatacgaagagagaagaccgtgttg--tgtttggattttgcagATCCGGATGCGGAGGTGATCGCTTTGTCACCCAAAACCCTAATGGCAACGAACCGGTTCGTCTGCGAGATCTGCAACAAAGGGTTCCAACGCGACCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtggagtgatgagttcaatctggcaaccgtactggatgatttgaatacgcagACCCGGAAGCCGAGGTGATCGCGTTGTCACCAAAAACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGTTTTCAGCGCGACCAAAA
                                         atttgaata  TA-rich tract