1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cggatgcgttaaacatcacccacgagtgatgttaatggcagtattttggtgctgaattgagtgatccttacaccgttgtctggttggtgagcattggcagGACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAG
species | Physcomitrella patens |
transcript | PP1S162_64V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGTCCGGCAATATTGAGGAGCTCCAAGTTATCAGAGACCTGCATAAGAC GACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAGEST: gi|162153938|gb|FC329445.1|FC329445
genomic: GAGTCCGGCAATATTGAGGAGCTCCAAGTTATCAGAGACCTGCATAAGACgtacatctca ... gcattggcagGACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAG
EST: GAGTCCGGCAATATTGAGGAGCTCCAAGTTATCAGAGACCTGCATAAGAC GACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAGEST: gi|162228976|gb|FC404738.1|FC404738
genomic: GAGTCCGGCAATATTGAGGAGCTCCAAGTTATCAGAGACCTGCATAAGACgtacatctca ... gcattggcagGACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAG
EST: GAGTCCGGCAATATTGAGGAGCTCCAAGTTATCAGAGACCTGCATAAGAC GACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAGEST: gi|162178341|gb|FC355163.1|FC355163
genomic: GAGTCCGGCAATATTGAGGAGCTCCAAGTTATCAGAGACCTGCATAAGACgtacatctca ... gcattggcagGACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAG
EST: GAGTCCGGCAATATTGAGGAGCTCCAAGTTATCAGAGACCTGCATAAGAC GACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAG
genomic: GAGTCCGGCAATATTGAGGAGCTCCAAGTTATCAGAGACCTGCATAAGACgtacatctca ... gcattggcagGACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAG
ttggtgctgaattgagtgatccttacaccgttgtctggttggtgagcattggcagGACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAG
tccttac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggatgcgttaaacatcacccacgagtgatgttaatggcagtattttggtgctgaattgagtgatccttacaccgttgtctggttggtgagcattggcagGACAGCACGTGAACTCAAAGTGGATGAATCTTTGGTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa