1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatctataatttgacactatctagttgcctgagtgtaagtaatctttctcgcatgtctaaaatccttgcgcttagtactattagctttatgcttctatgaaaagttggcattcttggagtgaagacggcaaacaacattccagaacaattgcttaaccacgtgattcaccttgctacagACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAACAGCTGAAGGAACTTCTGAATCAGTCCAACACGCAGAAAGATCCAATGA
species | Physcomitrella patens |
transcript | PP1S162_167V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCAACAGTTTTACACATTTTTCATCTGCCGCCTCTCCAGATGTTTCAG ACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAAEST: gi|100412409|gb|BY974719.1|BY974719
genomic: CCTCAACAGTTTTACACATTTTTCATCTGCCGCCTCTCCAGATGTTTCAGgtaatctata ... cttgctacagACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAA
EST: CCTCAACAGTTTTACACATTTTTCATCTGCCGCCTCTCCAGATGTTTCAG ACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAAEST: gi|161979270|gb|EE296328.1|EE296328
genomic: CCTCAACAGTTTTACACATTTTTCATCTGCCGCCTCTCCAGATGTTTCAGgtaatctata ... cttgctacagACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAA
EST: CCTCAACAGTTTTACACATTTTTCATCTGCCGCCTCTCCAGATGTTTCAG ACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTEST: gi|162273781|gb|FC449712.1|FC449712
genomic: CCTCAACAGTTTTACACATTTTTCATCTGCCGCCTCTCCAGATGTTTCAGgtaatctata ... cttgctacagACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGT
EST: CCTCAACAGTTTTACACATTTTTCATCTGCCGCCTCTCCAGATGTTTCAG ACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAA
genomic: CCTCAACAGTTTTACACATTTTTCATCTGCCGCCTCTCCAGATGTTTCAGgtaatctata ... cttgctacagACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAA
acggcaaacaacattccagaacaattgcttaaccacgtgattcaccttgctacagACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAACAGCTGAAGGAACTTCTGAATCAGTCCAACACGCAGAAAGATCCAATGA
gcttaac putative branch site (score: 3)
ttcacctt putative PPT
aacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctataatttgacactatctagttgcctgagtgtaagtaatctttctcgcatgtctaaaatccttgcgcttagtactattagctttatgcttctatgaaaagttggcattcttggagtgaagacggcaaacaacattccagaacaattgcttaaccacgtgattcaccttgctacagACAAAACGGGCAGTCCAGAGTATTCTGCAGCAGAACCTAGTCGTACATCAACAGCTGAAGGAACTTCTGAATCAGTCCAACACGCAGAAAGATCCAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA