1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtaccgttcttcgaatccaacttctgaattgttagacagattcgtatgaaggttttgtggatgtagacgagctcgagtcaattaaacaggagtgtgattgcttccttgtgcttcttcaagatcaactagtaacgtagaggaggggtcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTGCCGAGAAGAAGAGTGGAAGGAGGGGCCCAGGAAGTGTATTTGGGTCCT
species | Physcomitrella patens |
transcript | PP1S158_146V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTEST: gi|67572126|gb|BJ944950.1|BJ944950
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTEST: gi|208360410|gb|DC930791.1|DC930791
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTEST: gi|208366843|gb|DC940157.1|DC940157
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTEST: gi|100372845|gb|BY948729.1|BY948729
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTEST: gi|208367100|gb|DC935928.1|DC935928
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTEST: gi|100377948|gb|BY949603.1|BY949603
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTEST: gi|67569869|gb|BJ942693.1|BJ942693
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTEST: gi|100445814|gb|CJ970113.1|CJ970113
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
EST: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTT GGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
genomic: GAGCTTTCGGATGGCGAGGGACTTTAATTGTTTCTTTATACTTCGTTCTTgtatgtaccg ... tcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATT
cttccttgtgcttcttcaagatcaactagtaacgtagaggaggggtcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTGCCGAGAAGAAGAGTGGAAGGAGGGGCCCAGGAAGTGTATTTGGGTCCT
tagtaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaccgttcttcgaatccaacttctgaattgttagacagattcgtatgaaggttttgtggatgtagacgagctcgagtcaattaaacaggagtgtgattgcttccttgtgcttcttcaagatcaactagtaacgtagaggaggggtcaactgcagGGAACAATTGCTACGAAAGTAAAGATCAAACAGAAAGAAGCTGCTGGGATTGCCGAGAAGAAGAGTGGAAGGAGGGGCCCAGGAAGTGTATTTGGGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG