1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctgaaagtcccacagcatgtctaaccgtgttcagaaatataattggtgtgattgatttctcttgttcatttgctgctgtgtgacgtatgccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGGGCTTTAACAGAACTGGAGCTCCAGCACGGTTCTGGTTAGCAGTGGAGC
species | Physcomitrella patens |
transcript | PP1S155_48V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATTCTGACGGTGGTCGATTTCTC--ATGCCACTGAAACTCTGGACAAG GTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGEST: gi|162172959|gb|FC347869.1|FC347869
genomic: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAGgtattgtgct ... ccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAG
EST: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAG GTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGEST: gi|37824150|gb|BJ582216.1|BJ582216
genomic: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAGgtattgtgct ... ccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAG
EST: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAG GTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGEST: gi|18335349|gb|BJ167367.1|BJ167367
genomic: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAGgtattgtgct ... ccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAG
EST: TGATTCTGACGGTGGTCGATTTCTC--ATGCCACTGAAACTCTGGACAAG GTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGEST: gi|162172960|gb|FC347870.1|FC347870
genomic: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAGgtattgtgct ... ccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAG
EST: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAG GTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGEST: gi|37836503|gb|BJ594511.1|BJ594511
genomic: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAGgtattgtgct ... ccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAG
EST: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAG GTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAG
genomic: TGATTCTGACGGTGGTCGATTTCTCAGATGCCACTGAAACTCTGGACAAGgtattgtgct ... ccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAG
ggtgtgattgatttctcttgttcatttgctgctgtgtgacgtatgccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGGGCTTTAACAGAACTGGAGCTCCAGCACGGTTCTGGTTAGCAGTGGAGC
gattgat putative branch site (score: 4)
ccaccttc putative PPT
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaaagtcccacagcatgtctaaccgtgttcagaaatataattggtgtgattgatttctcttgttcatttgctgctgtgtgacgtatgccaccttcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGGGCTTTAACAGAACTGGAGCTCCAGCACGGTTCTGGTTAGCAGTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG