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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgttggagtttggttcatgtttattgtgtccaatcaccaggattgctgtattgtcaccttttacttatattctgtaaattggtgtctgtctgcaacagATGGTGTCTCTCGTACGGATTTGAG

Basic information

species Physcomitrella patens
transcript PP1S154_6V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360118|gb|BJ192180.1|BJ192180
EST:     ATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAG                         ATGGTGTCTCTCGTACGGATTTGAG
genomic: ATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAGgtgctcttgg ... tctgcaacagATGGTGTCTCTCGTACGGATTTGAG
EST: gi|18367934|gb|BJ200017.1|BJ200017
EST:     ATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAG                         ATGGTGTCTCTCGTACGGATTTGAGTG
genomic: ATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAGgtgctcttgg ... tctgcaacagATGGTGTCTCTCGTACGGATTTGAGTG
EST: gi|18372309|gb|BJ203911.1|BJ203911
EST:     ATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAG                         ATGGTGTCTCTCGTACGGATTTGAG
genomic: ATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAGgtgctcttgg ... tctgcaacagATGGTGTCTCTCGTACGGATTTGAG
EST: gi|18372886|gb|BJ204488.1|BJ204488
EST:     ATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAG                         ATGGTGTCTCTCGTACGGATTTGAG
genomic: ATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAGgtgctcttgg ... tctgcaacagATGGTGTCTCTCGTACGGATTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgtattgtcaccttttacttatattctgtaaattggtgtctgtctgcaacagATGGTGTCTCTCGTACGGATTTGAG
                                         tctgtct  CT-rich tract
               ttttacttatattctg  TA-rich tract