1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...acttgaaactggagatgattcatcaatcccatttgtgcaacttctctttgaggtttgaaaactaaatgtttcatattcttcctctactgcgtctgaacagCCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTAAGAAACTGCAGAATGGCAG
species | Physcomitrella patens |
transcript | PP1S152_87V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGACTTACTTACTATCTCGTCGACCAGGAACGGCAATGGAGACTCGAG CCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTAEST: gi|162244981|gb|FC424939.1|FC424939
genomic: TTCGACTTACTTACTATCTCGTCGACCAGGAACGGCAATGGAGACTCGAGgtacgttctt ... gtctgaacagCCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTA
EST: TTCGACTTACTTACTATCTCGTCGACCAGGAACGGCAATGGAGACTCGAG CCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTAEST: gi|100419828|gb|BY957728.1|BY957728
genomic: TTCGACTTACTTACTATCTCGTCGACCAGGAACGGCAATGGAGACTCGAGgtacgttctt ... gtctgaacagCCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTA
EST: TTCGACTTACTTACTATCTCGTCGACCAGGAACGGCAATGGAGACTCGAG CCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTAEST: gi|162159476|gb|FC336265.1|FC336265
genomic: TTCGACTTACTTACTATCTCGTCGACCAGGAACGGCAATGGAGACTCGAGgtacgttctt ... gtctgaacagCCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTA
EST: CCAGGAACGGCAATGGAGACTCGAG CCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTAEST: gi|100397210|gb|BY972385.1|BY972385
genomic: CCAGGAACGGCAATGGAGACTCGAGgtacgttctt ... gtctgaacagCCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTA
EST: TTCGACTTACTTACTATCTCGTCGACCAGGAACGGCAATGGAGACTCGAG CCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTA
genomic: TTCGACTTACTTACTATCTCGTCGACCAGGAACGGCAATGGAGACTCGAGgtacgttctt ... gtctgaacagCCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTA
ctttgaggtttgaaaactaaatgtttcatattcttcctctactgcgtctgaacagCCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTAAGAAACTGCAGAATGGCAG
aactaaa putative branch site (score: 2)
taaatgtttcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgaaactggagatgattcatcaatcccatttgtgcaacttctctttgaggtttgaaaactaaatgtttcatattcttcctctactgcgtctgaacagCCGCTGTTTCTGTCGGAAGTGAATCAACATTGTCTCAGGTCGTGGACTTTAAGAAACTGCAGAATGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG