1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcatgactctatctttttagggcatcatttcgaattcttcataatttcaagtgtttactcctgttctactcttgacattggtgtcattatcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAGTGGCGAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATTACAC
species | Physcomitrella patens |
transcript | PP1S152_141V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67723959|gb|BJ974218.1|BJ974218
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|7147834|gb|AW509756.1|AW509756
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|15729871|gb|BI741529.1|BI741529
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|19790006|gb|BQ041638.1|BQ041638
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162249592|gb|FC426784.1|FC426784
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: CGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|6167181|gb|AW145445.1|AW145445
genomic: CGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGCGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67725985|gb|BJ976244.1|BJ976244
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67716681|gb|BJ966941.1|BJ966941
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|18337734|gb|BJ169758.1|BJ169758
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: ACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGNAGGCAGGAAGAGGCCAEST: gi|19789278|gb|BQ041210.1|BQ041210
genomic: ACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGTTCTTGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|7148070|gb|AW509992.1|AW509992
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162274706|gb|FC450486.1|FC450486
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67702132|gb|BJ962365.1|BJ962365
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|18324928|gb|BJ156923.1|BJ156923
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67724568|gb|BJ974827.1|BJ974827
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|18326722|gb|BJ158721.1|BJ158721
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|208350163|gb|DC926118.1|DC926118
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|19789414|gb|BQ041295.1|BQ041295
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCATGAAGAGGCCAEST: gi|162265202|gb|FC441289.1|FC441289
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|18329917|gb|BJ161923.1|BJ161923
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162204518|gb|FC380810.1|FC380810
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|18339110|gb|BJ171136.1|BJ171136
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162262887|gb|FC438773.1|FC438773
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|18334710|gb|BJ166727.1|BJ166727
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162274720|gb|FC450487.1|FC450487
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67723877|gb|BJ974136.1|BJ974136
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTGCCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162262914|gb|FC438774.1|FC438774
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67710289|gb|BJ965952.1|BJ965952
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|7147831|gb|AW509753.1|AW509753
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67709674|gb|BJ965490.1|BJ965490
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67723750|gb|BJ974009.1|BJ974009
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67720626|gb|BJ970885.1|BJ970885
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162223158|gb|FC398788.1|FC398788
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67709801|gb|BJ965617.1|BJ965617
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTGCCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162267259|gb|FC442671.1|FC442671
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162204517|gb|FC380809.1|FC380809
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCTTTCCCCGTGGAGGCAGGAAGAGGCCAEST: gi|67717468|gb|BJ967727.1|BJ967727
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162267258|gb|FC442670.1|FC442670
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|208396192|gb|DC923986.1|DC923986
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162207538|gb|FC383783.1|FC383783
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|100398906|gb|BY990575.1|BY990575
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67712861|gb|BJ966310.1|BJ966310
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162223159|gb|FC398789.1|FC398789
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67724214|gb|BJ974473.1|BJ974473
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67709881|gb|BJ965697.1|BJ965697
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|6227523|gb|AW156122.1|AW156122
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|37840911|gb|BJ598919.1|BJ598919
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67720619|gb|BJ970878.1|BJ970878
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67709625|gb|BJ965441.1|BJ965441
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGCGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|18363752|gb|BJ195824.1|BJ195824
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|208353095|gb|DC910146.1|DC910146
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67702125|gb|BJ962358.1|BJ962358
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67725202|gb|BJ975461.1|BJ975461
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|162227057|gb|FC402258.1|FC402258
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|19782582|gb|BQ039872.1|BQ039872
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCATGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|7067172|gb|AW497027.1|AW497027
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: CCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAEST: gi|67725152|gb|BJ975411.1|BJ975411
genomic: CCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAA-GGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
tttcaagtgtttactcctgttctactcttgacattggtgtcattatcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAGTGGCGAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATTACAC
tcttgac putative branch site (score: 57)
ttatctt putative PPT
attatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatgactctatctttttagggcatcatttcgaattcttcataatttcaagtgtttactcctgttctactcttgacattggtgtcattatcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAGTGGCGAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATTACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC