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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaagagtgtacgaatgtttgggacattctctgaagaagtttcatggctttggacatatctttttgaatgttgattaatttacggtttctgcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCACGAGTTCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTC

Basic information

species Physcomitrella patens
transcript PP1S14_318V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S14_318V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 2
acaagagtgtacgaatgtttgggacattctctgaa-gaagtttcatggc--tttggacatatctttttgaatgttgattaatttacggtttctgcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCACGAGTTCTTATCACTCCAACCAACGACTTGGGAAAGATCCTC-CAAGCTC
|  |   | |  |||| |||      |||  |||| |  | ||  | ||  ||||      |  |||   ||    | |  || |   |||||   ||| ||||| |||||||| |||||||| || ||||| ||||||||||| |||||    |||||| |  ||||||| || | |||  | || |||||| |  |  ||  
aggattttctttgaatttttt---ttttccgtgaacggtgcttgcttgcgatttgagtgatttgtttctgattgaaactttttaattttttctttctgtacagTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCCGAGTTTTGGTCACTCCCACAAGCGATCTCGGCAAGATCTTGGCGTGCA-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100381151|gb|BY950004.1|BY950004
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100410542|gb|BY992154.1|BY992154
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100424156|gb|BY958342.1|BY958342
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67709869|gb|BJ965685.1|BJ965685
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67719536|gb|BJ969795.1|BJ969795
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|18372410|gb|BJ204012.1|BJ204012
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|18366328|gb|BJ198407.1|BJ198407
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100399854|gb|BY990655.1|BY990655
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100359179|gb|BY965630.1|BY965630
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|18344610|gb|BJ176651.1|BJ176651
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100422820|gb|BY958017.1|BY958017
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|162270585|gb|FC446510.1|FC446510
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100361055|gb|BY946891.1|BY946891
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100444272|gb|BY982301.1|BY982301
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67703411|gb|BJ963644.1|BJ963644
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100426210|gb|BY958783.1|BY958783
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100414734|gb|BY956837.1|BY956837
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67710256|gb|BJ965919.1|BJ965919
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100390114|gb|BY989194.1|BY989194
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67702739|gb|BJ962972.1|BJ962972
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100410928|gb|BY956252.1|BY956252
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100449851|gb|CJ973968.1|CJ973968
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67719741|gb|BJ970000.1|BJ970000
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|18343869|gb|BJ175907.1|BJ175907
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|18357197|gb|BJ189256.1|BJ189256
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67569334|gb|BJ942158.1|BJ942158
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100449557|gb|CJ973819.1|CJ973819
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|208361374|gb|DC930371.1|DC930371
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100436137|gb|BY979398.1|BY979398
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGCGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|162195399|gb|FC370868.1|FC370868
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67716301|gb|BJ966561.1|BJ966561
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100353224|gb|BY945668.1|BY945668
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100400831|gb|BY972965.1|BY972965
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|100381386|gb|BY950102.1|BY950102
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|18375025|gb|BJ206603.1|BJ206603
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|67717273|gb|BJ967532.1|BJ967532
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
EST: gi|18326030|gb|BJ158029.1|BJ158029
EST:     TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAG                         TCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA
genomic: TTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 30 (downstream exon)
Score: 5

CATGGACAACTCAGAGTGGATGCGGAACGGCGATTATTCACCTACTAGGTTTCAAGCTCAAGCTGATGCTATAAACCTGATTTGCGGCGCTAAAACTCAGgtaacattgc ... gcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCACGAGTTCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctttggacatatctttttgaatgttgattaatttacggtttctgcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCACGAGTTCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTC
                           gattaat  putative branch site (score: 5)
                                        tttctgctt  putative PPT
          atatctttttgaatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acaagagtgtacgaatgtttgggacattctctgaagaagtttcatggctttggacatatctttttgaatgttgattaatttacggtttctgcttgtgcagTCGAATCCAGAGAATACTGTCGGTGTTCTGACAATGGCAGGTAAAGGCCCACGAGTTCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT