1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAGCGGCAGCCAAGACGAATGACTTGGCTGGTGACGGTACCACCACCTCTG
species | Physcomitrella patens |
transcript | PP1S14_298V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162171350|gb|FC346443.1|FC346443
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|67717000|gb|BJ967259.1|BJ967259
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|67570060|gb|BJ942884.1|BJ942884
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|208371103|gb|DC931563.1|DC931563
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|18325539|gb|BJ157536.1|BJ157536
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|208353715|gb|DC929716.1|DC929716
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|67709685|gb|BJ965501.1|BJ965501
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|100399573|gb|BY972786.1|BY972786
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162195954|gb|FC372151.1|FC372151
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|208351065|gb|DC913501.1|DC913501
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162170824|gb|FC347438.1|FC347438
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: GTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|18351786|gb|BJ183838.1|BJ183838
genomic: GTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162157418|gb|FC333195.1|FC333195
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|100446886|gb|CJ971185.1|CJ971185
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162187436|gb|FC362658.1|FC362658
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162193667|gb|FC371246.1|FC371246
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162173847|gb|FC349439.1|FC349439
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: CAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162158432|gb|FC334227.1|FC334227
genomic: CAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|100371786|gb|BY967552.1|BY967552
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|18362987|gb|BJ195059.1|BJ195059
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|100436275|gb|BY961135.1|BY961135
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162195933|gb|FC372143.1|FC372143
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|208359427|gb|DC939152.1|DC939152
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|208399108|gb|DC904517.1|DC904517
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|18348726|gb|BJ180775.1|BJ180775
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAN GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGANGCAAEST: gi|162167160|gb|FC343636.1|FC343636
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162255992|gb|FC431756.1|FC431756
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162227587|gb|FC403529.1|FC403529
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|208362500|gb|DC939480.1|DC939480
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|162158158|gb|FC333953.1|FC333953
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|18373756|gb|BJ205334.1|BJ205334
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|100440490|gb|BY962227.1|BY962227
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAEST: gi|18367415|gb|BJ199498.1|BJ199498
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
gatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAGCGGCAGCCAAGACGAATGACTTGGCTGGTGACGGTACCACCACCTCTG
aattaac putative branch site (score: 14)
ttttcaattaa TA-rich tract