1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaacataaacattcttctacatgttgcgttatttatggtcatgttgtagcgactgatttatgaggcacgaaagtacatggggtctgatagagtcgagcatgtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATACCTAACGGTGATAAAGTGGATATGGTCACCATGCTGGAGAAGGCTATCA
species | Physcomitrella patens |
transcript | PP1S147_136V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATAEST: gi|162149786|gb|FC325901.1|FC325901
genomic: CGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
EST: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATAEST: gi|37836640|gb|BJ594648.1|BJ594648
genomic: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
EST: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATAEST: gi|162234336|gb|FC410082.1|FC410082
genomic: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
EST: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATAEST: gi|162256141|gb|FC432426.1|FC432426
genomic: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
EST: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATAEST: gi|37836162|gb|BJ594170.1|BJ594170
genomic: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
EST: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATAEST: gi|37829498|gb|BJ587510.1|BJ587510
genomic: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
EST: TCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATAEST: gi|162170413|gb|FC347611.1|FC347611
genomic: TCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
EST: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATAEST: gi|18332518|gb|BJ164531.1|BJ164531
genomic: CTCGTGCACGCCAAGGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
EST: GGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGG GTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
genomic: GGGAGTGCCAATGATCCGCAGAGCATTGCTGCTAGGgtaacataaa ... gtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacataaacattcttctacatgttgcgttatttatggtcatgttgtagcgactgatttatgaggcacgaaagtacatggggtctgatagagtcgagcatgtgcacacagGTGCGAAGAGAAAGAATAAGTGAGCGGCTCAAAGTTTTGCAAGCCTTGATACCTAACGGTGATAAAGTGGATATGGTCACCATGCTGGAGAAGGCTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA