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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtattttatgcactctcaggaaacgtagttttgaaatggtctatgttataggacgtcggttgaactatgtttgagtatctcgcatgtaatgttattacagGGTCCCCGTATGGTGCGTGATGTATTTCAACTGGCAAAGGAAAATGCCCCAGCTATTATATTTATTGATGAAATTGATGCAATCGCAACAGCCCGTTTCG

Basic information

species Physcomitrella patens
transcript PP1S147_100V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA18G05730.1 (Glycine max), 3'ss of exon 2
gtattttatgcactctcaggaaacgtagttttgaaatggtctatgttataggacgtcggtt-gaactatgtttgagtatctcgcatgtaatgt-tattacagGGTCCCCGTATGGTGCGTGATGTATTTCAACTGGCAAAGGAAAATGCCCCAGCTATTATATTTATTGATGAAATTGATGCAATCGCAACAGCCCGTTTCG
     | | |    ||  ||      | ||     || || |||||| |      | | || || | |  | |    ||||  | ||  || | |||| |||||||| || ||||| |||||||||||||  || || || || |||||||| || |||||||||||||||||  |||||||||| || || ||  | ||  
-ctcctaaagtttcctgggggtttcaaattcattgattgtatatgttcttatcaatggtttagagcaacatcttcaaatcttccctgccatttatatttcaGGGTCCACGAATGGTCCGTGATGTATTTCGTCTTGCTAAAGAGAATGCCCCTGCAATTATATTTATTGATGAGGTTGATGCAATAGCCACTGCTAGATTT-

upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA11G31470.1 (Glycine max), 3'ss of exon 2
gtattttatgcactctcaggaaacgtagttttga-aatggtctatgttataggacgtcggtt-gaactatgtttgagtatctcgcatgt-aatgttattacagGGTCCCCGTATGGTGCGTGATGTATTTCAACTGGCAAAGGAAAATGCCCCAGCTATTATATTTATTGATGAAATTGATGCAATCGCAACAGCCCGTTTCG
   |  ||     ||  ||||     |  |      || || | |||| |      | | || || | |  | |    ||||  | ||  | | |||||  ||||||| || ||||| |||||||||||||  || || || || ||||| || ||||||||||||||||||||  |||||||||| || || ||  | || |
---tcctaaagtttcctaggagtttcaaatccattgattgtatgtgttttgatcaatggtttagagcaacatcttcaaatcttccctgccatttttattttagGGTCCACGAATGGTTCGTGATGTATTTCGTCTCGCTAAAGAGAATGCGCCTGCTATTATATTTATTGATGAGGTTGATGCAATAGCCACTGCTAGATTTG

upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA11G31450.1 (Glycine max), 3'ss of exon 2
gtattttatgcactctcaggaaacgtagttttga-aatggtctatgttataggacgtcggtt-gaactatgtttgagtatctcgcatgtaatgt-tattacagGGTCCCCGTATGGTGCGTGATGTATTTCAACTGGCAAAGGAAAATGCCCCAGCTATTATATTTATTGATGAAATTGATGCAATCGCAACAGCCCGTTTCG
   |  ||     |||  |||     |  || |   || || |||||| ||     | | || || | |  | |    ||||  | ||  || | |||| |||||||| || ||||| |||||||||||||  || || || || ||||| || || |||||||||||||||||  |||||||||| || || ||  | || |
---tcctaaaatttcttgggagtttcatattcgttgattgtatatgttttaatcaatggtttagagcaacatcttcaaatcttccctgccatttatatttcagGGTCCACGAATGGTTCGTGATGTATTTCGTCTCGCTAAAGAGAATGCGCCTGCAATTATATTTATTGATGAGGTTGATGCAATAGCCACGGCTAGATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataggacgtcggttgaactatgtttgagtatctcgcatgtaatgttattacagGGTCCCCGTATGGTGCGTGATGTATTTCAACTGGCAAAGGAAAATGCCCCAGCTATTATATTTATTGATGAAATTGATGCAATCGCAACAGCCCGTTTCG
                                      atgtaatgttatta  TA-rich tract