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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgcccgctgattgtttccgttccttcgatatttgcattgttgacttgacttgagctttgtttagttgggattatatggtctcttacacaagcttactcatccaagggcgagcgaactcatatatttttacttgcaatatgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT

Basic information

species Physcomitrella patens
transcript PP1S142_132V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162244893|gb|FC424669.1|FC424669
EST:     GTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG                         GTCCTGAGGCACCACCCATTTTCAAACTGT
genomic: GTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTC-AACTGT
EST: gi|162236289|gb|FC412032.1|FC412032
EST:     CGATTTGGAAATTG                         GTCCTGAGGCACCAGCCATTTTCAACTGT
genomic: CGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: gi|208396434|gb|DC920086.1|DC920086
EST:     CCATGGCACGATTTGGAAATNG                         GTCCTGAGGCACCAGCCATTTTCAACTGT
genomic: CCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: gi|208381293|gb|DC919183.1|DC919183
EST:     CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG                         GTCCTGAGGCACCAGCCATTTTCAACTGT
genomic: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: gi|162259318|gb|FC436209.1|FC436209
EST:     CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG                         GTCCTGAGGCACCAGCCATTTTCAACTGT
genomic: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: gi|208380290|gb|DC922712.1|DC922712
EST:     CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG                         GTCCTGAGGCACCAGCCATTTTCAACTGT
genomic: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: gi|67698989|gb|BJ959222.1|BJ959222
EST:     CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG                         GTCCTGAGGCACCAGCCATTTTCAACTGT
genomic: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactcatccaagggcgagcgaactcatatatttttacttgcaatatgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
 agcttac  putative branch site (score: 3)
                                             tgtccctc  putative PPT
                         atatatttttacttgc  TA-rich tract