1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cagtgttttgtcttcacctccgtccatttgttttctatgccatatagtttgatcttgctgtagtcagagagtaatgttaagaggatctatgtttgcgcagGTGTGCGACGCTCAGTATACTGAGATCATTCCTTGTTTGGACCTCAAAATGAATAAGAAATTAAAGTTGAAGCTCAACCACTCTGTCATGGAGCATTACG
species | Physcomitrella patens |
transcript | PP1S140_59V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATCAGAGGATGAAACCGCATCCGACGGTGATACGTCGAAAGTGTTACCC GTGTGCGACGCTCAGTATACTGAGATCATTCCTTGTTTGGACCTCAAAATGEST: gi|162150248|gb|FC326333.1|FC326333
genomic: AATCAGAGGATGAAACCGCATCCGACGGTGATACGTCGAAAGTGTTACCCgtaagttcag ... gtttgcgcagGTGTGCGACGCTCAGTATACTGAGATCATTCCTTGTTTGGACCTCAAAATG
EST: AATCAGAGGATGAAACCGCATCCGACGGTGATACGTCGAAAGTGTTACCC GTGTGCGACGCTCAGTATACTGAGATCATTCCTTGTTTGGACCTCAAAATG
genomic: AATCAGAGGATGAAACCGCATCCGACGGTGATACGTCGAAAGTGTTACCCgtaagttcag ... gtttgcgcagGTGTGCGACGCTCAGTATACTGAGATCATTCCTTGTTTGGACCTCAAAATG
agtttgatcttgctgtagtcagagagtaatgttaagaggatctatgtttgcgcagGTGTGCGACGCTCAGTATACTGAGATCATTCCTTGTTTGGACCTCAAAATGAATAAGAAATTAAAGTTGAAGCTCAACCACTCTGTCATGGAGCATTACG
gtttgat putative branch site (score: 5)
taatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgttttgtcttcacctccgtccatttgttttctatgccatatagtttgatcttgctgtagtcagagagtaatgttaagaggatctatgtttgcgcagGTGTGCGACGCTCAGTATACTGAGATCATTCCTTGTTTGGACCTCAAAATGAATAAGAAATTAAAGTTGAAGCTCAACCACTCTGTCATGGAGCATTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA