1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagtttatctaaggaagacctggaatcaggctttccgtaggctatgccaactacctcgcaaatttcttttctaaagctgacaacaagtttgcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAACCGTTGAAG
species | Physcomitrella patens |
transcript | PP1S140_172V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAAEST: gi|100360499|gb|BY983815.1|BY983815
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
EST: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAAEST: gi|208357242|gb|DC910653.1|DC910653
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
EST: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAAEST: gi|208358940|gb|DC939224.1|DC939224
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
EST: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAAEST: gi|162252651|gb|FC428688.1|FC428688
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
EST: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
gccaactacctcgcaaatttcttttctaaagctgacaacaagtttgcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAACCGTTGAAG
aaatttcttttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtttatctaaggaagacctggaatcaggctttccgtaggctatgccaactacctcgcaaatttcttttctaaagctgacaacaagtttgcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAACCGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG