1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttggttggttgtgttgcgaaattagagttgtggttttatggaattggtagtgtgagagtaacgttggtcgattgtttcgttttctgggagattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAAGGTCGACAAAGAAAAGTTGGTGGCTGGTACTCGAGTGGCACTAGATAT
species | Physcomitrella patens |
transcript | PP1S13_419V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGAT TGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAEST: gi|18368384|gb|BJ200469.1|BJ200469
genomic: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGATgtaagtgaca ... gattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACA
EST: GTGGGTCAAATCATCGGGGGAAGTGTTGAGACAGCTTGATTCTGAACGAT TGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAEST: gi|18327039|gb|BJ159040.1|BJ159040
genomic: GTGGGTCAAATCATCGGGG-AAGTGTTGAGACAGCTTGATTCTGAACGATgtaagtgaca ... gattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGAT TGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAEST: gi|18360089|gb|BJ192151.1|BJ192151
genomic: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGATgtaagtgaca ... gattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACA
EST: GTGGGTCAAATCATCGGGGGAAGTGTTGAGACAGCTTGATTCTGAACGAT TGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAEST: gi|67507697|gb|BJ940577.1|BJ940577
genomic: GTGGGTCAAATCATCGGGG-AAGTGTTGAGACAGCTTGATTCTGAACGATgtaagtgaca ... gattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGAT TGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAEST: gi|18346638|gb|BJ178683.1|BJ178683
genomic: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGATgtaagtgaca ... gattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGAT TGATTGTTAAGGCCAGCAGTGGTCCACGEST: gi|208391808|gb|DC942342.1|DC942342
genomic: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGATgtaagtgaca ... gattggccagTGATTGTTAAGGCCAGCAGTGGTCCACG
EST: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGAT TGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAEST: gi|100383943|gb|BY987200.1|BY987200
genomic: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGATgtaagtgaca ... gattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACA
EST: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGAT TGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACA
genomic: CGTGGGTCAAATCATCGGGGAAGTGTTGAGACAGCTTGATTCTGAACGATgtaagtgaca ... gattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACA
tggtagtgtgagagtaacgttggtcgattgtttcgttttctgggagattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAAGGTCGACAAAGAAAAGTTGGTGGCTGGTACTCGAGTGGCACTAGATAT
gagtaac putative branch site (score: 2)
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggttggttgtgttgcgaaattagagttgtggttttatggaattggtagtgtgagagtaacgttggtcgattgtttcgttttctgggagattggccagTGATTGTTAAGGCCAGCAGTGGTCCACGATATGTGGTCGGATGCCGCAACAAGGTCGACAAAGAAAAGTTGGTGGCTGGTACTCGAGTGGCACTAGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG