Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttatttcagatggtactgtgtcattctacaaatcgtgtgataaacatttatgatgacacaaaatgtaattgagccagatatctacaatgattttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCGCAAAGCTAAGCGTGAGGCACCAGCTGGCGAGAAGCCTGAACCTGTGAGG

Basic information

species Physcomitrella patens
transcript PP1S13_413V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S13_413V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv07s0141g00710.t01 (Vitis vinifera), 3'ss of exon 2
cttatttcagatggtactgtgtcattctacaaat-cgtgtgataaacatttatgatgacacaaaatgtaattgagccagatatctacaatgatt--ttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCGCAAAGCTAAGCGTGAGGCACCAGCTGGCGAGAAGCCTGAACCTGTGAGG
  || |  |  || |||  |  | || ||   ||   | | |     | |||  |||       || || ||        | | ||   ||||    |   |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||||||                                           
-gtaatcgatctgataccatcgctttatattcatgtatattagtgttacttacaatgg-gttttatttatttatttatagtgtgtatgttgatgaaatattagGTTTCAACGTGGTTTGAAGCGCAAGCCGATGGCATTGATCAAGAAACTGCGCAAAGCA------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67720135|gb|BJ970394.1|BJ970394
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67726550|gb|BJ976809.1|BJ976809
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATGTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGC
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGAT-TAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGC
EST: gi|67573461|gb|BJ946285.1|BJ946285
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|19788906|gb|BQ040992.1|BQ040992
EST:     TGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGACCATGGCTTTGATTAAGAAACTGCG
genomic: TGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|18367386|gb|BJ199469.1|BJ199469
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162246076|gb|FC423564.1|FC423564
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67703141|gb|BJ963374.1|BJ963374
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162256576|gb|FC432886.1|FC432886
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162236134|gb|FC411123.1|FC411123
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162219898|gb|FC396713.1|FC396713
EST:     CGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: CGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|18369431|gb|BJ201518.1|BJ201518
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|19779101|gb|BQ039403.1|BQ039403
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|37843047|gb|BJ601055.1|BJ601055
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67701647|gb|BJ961880.1|BJ961880
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67725981|gb|BJ976240.1|BJ976240
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162261836|gb|FC438360.1|FC438360
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|19787458|gb|BQ040628.1|BQ040628
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162254398|gb|FC430533.1|FC430533
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|19789804|gb|BQ041523.1|BQ041523
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|18329053|gb|BJ161059.1|BJ161059
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|15728290|gb|BI740713.1|BI740713
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67719739|gb|BJ969998.1|BJ969998
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|7067117|gb|AW496972.1|AW496972
EST:     ATGAGCATGGATGAGCTCGGTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|19789860|gb|BQ041556.1|BQ041556
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67717464|gb|BJ967723.1|BJ967723
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|37849193|gb|BJ607201.1|BJ607201
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67702344|gb|BJ962577.1|BJ962577
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|37847868|gb|BJ605876.1|BJ605876
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67728006|gb|BJ978265.1|BJ978265
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67696842|gb|BJ957075.1|BJ957075
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162267342|gb|FC442130.1|FC442130
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|6167149|gb|AW145413.1|AW145413
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162219899|gb|FC396714.1|FC396714
EST:     CGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: CGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67698541|gb|BJ958774.1|BJ958774
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67718053|gb|BJ968312.1|BJ968312
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATGTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGC
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGAT-TAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGC
EST: gi|18375139|gb|BJ206717.1|BJ206717
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|208398737|gb|DC916260.1|DC916260
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAANCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|18325325|gb|BJ157321.1|BJ157321
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162205496|gb|FC381594.1|FC381594
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|37851084|gb|BJ609092.1|BJ609092
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67704710|gb|BJ964943.1|BJ964943
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|7047342|gb|AW477236.1|AW477236
EST:     TGAGCATGGATGAGGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: TGAGCATGGATGA-GCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|208356889|gb|DC902385.1|DC902385
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162256575|gb|FC432885.1|FC432885
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|18337255|gb|BJ169279.1|BJ169279
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67724054|gb|BJ974313.1|BJ974313
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162254399|gb|FC430534.1|FC430534
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67575089|gb|BJ947913.1|BJ947913
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|18340501|gb|BJ172529.1|BJ172529
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|162275442|gb|FC451821.1|FC451821
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
EST: gi|67709976|gb|BJ965792.1|BJ965792
EST:     ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAG                         GTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 27

CGTTTAAGAAGTTCACCTTCCGAGGAGTGGATCTAGATGCTCTCCTTGACATGAGCATGGATGAGCTCGTTGAGCTTTTCCACGCTCGCGCCCGCCGCAGgttttctttc ... attttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCGCAAAGCTAAGCGTGAGGCACCAGCTGGCGAGAAGCCTGAACCTGTGAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttatgatgacacaaaatgtaattgagccagatatctacaatgattttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCGCAAAGCTAAGCGTGAGGCACCAGCTGGCGAGAAGCCTGAACCTGTGAGG
               aaaatgtaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttatttcagatggtactgtgtcattctacaaatcgtgtgataaacatttatgatgacacaaaatgtaattgagccagatatctacaatgattttggcagGTTTCAGCGCGGATTAAAGCGCAAGCCCATGGCTTTGATTAAGAAACTGCGCAAAGCTAAGCGTGAGGCACCAGCTGGCGAGAAGCCTGAACCTGTGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC