1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctaacgagttgatatggattacttactctccgtatacactatatgaaccagtgcaatgttttcttttaaatcttgaaattccattactttttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACAAGATTTGAAGGTCAAGGCTATGTCCACAAATGGAGAAAATGGATACTA
species | Physcomitrella patens |
transcript | PP1S13_127V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|162256497|gb|FC432528.1|FC432528
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|18351331|gb|BJ183383.1|BJ183383
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|100366004|gb|BY967247.1|BY967247
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|162247058|gb|FC422232.1|FC422232
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|18355834|gb|BJ187893.1|BJ187893
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|18328557|gb|BJ160562.1|BJ160562
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|208367054|gb|DC935910.1|DC935910
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|67575873|gb|BJ948697.1|BJ948697
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|208382201|gb|DC914834.1|DC914834
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|67573975|gb|BJ946799.1|BJ946799
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|18372687|gb|BJ204289.1|BJ204289
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|18347787|gb|BJ179834.1|BJ179834
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|100415484|gb|BY992866.1|BY992866
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|18330436|gb|BJ162442.1|BJ162442
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|18348525|gb|BJ180574.1|BJ180574
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|100389613|gb|BY952419.1|BY952419
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|100443450|gb|BY981877.1|BY981877
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACEST: gi|18373476|gb|BJ205054.1|BJ205054
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
EST: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACG GAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
genomic: CTTGGGGCGTCACCGGTATCCTCATACCCCTGTCTGCACGAATTTCTACGgtgagtgttc ... ttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGAC
aaccagtgcaatgttttcttttaaatcttgaaattccattactttttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACAAGATTTGAAGGTCAAGGCTATGTCCACAAATGGAGAAAATGGATACTA
ttactttttgctttc CT-rich tract
ttttcttttaaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaacgagttgatatggattacttactctccgtatacactatatgaaccagtgcaatgttttcttttaaatcttgaaattccattactttttgctttcagGAGTGCGTCTCAGTGTCCGGCCATGGAATTCGCGGGGTGTGTACATGCGACAAGATTTGAAGGTCAAGGCTATGTCCACAAATGGAGAAAATGGATACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA