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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttatgaaatgtaatctggattttgctattatgtggcatgcttttctacctgatcgatgcctaatgttgccgttgggaatttgtggcttacatggcagTCTGGTTACGAGCGCTTGTGTTGTTTGCGGTGTATTCAACCCCGTGATCACAACTATGGAACAACATGTGTATGCCGGGTGCCCAAGCATCTGCGAGAAG

Basic information

species Physcomitrella patens
transcript PP1S139_95V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37835716|gb|BJ593728.1|BJ593728
EST:     GCTTAGAACAAGGCCACGCGGACAAGAATTTAATTGCCAAATGGAAGAAA                         TCTGGTTACGAGCGCTTGTGTTGTNTGCGGTGTATTCAACCCCGTGATCAC
genomic: GCTTAGAACAAGGCCACGCGGACAAGAATTTAATTGCCAAATGGAAGAAAgtaagttttt ... tacatggcagTCTGGTTACGAGCGCTTGTGTTGTTTGCGGTGTATTCAACCCCGTGATCAC
EST: gi|37828710|gb|BJ586722.1|BJ586722
EST:     GCTTAGAACAAGGCCACGCGGACAAGAATTTAATTGCCAAATGGAAGAAA                         TCTGGTTACGAGCGCTTGTGTTGTTTGCGGTGTATTCAACCCCGTGATCAC
genomic: GCTTAGAACAAGGCCACGCGGACAAGAATTTAATTGCCAAATGGAAGAAAgtaagttttt ... tacatggcagTCTGGTTACGAGCGCTTGTGTTGTTTGCGGTGTATTCAACCCCGTGATCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctacctgatcgatgcctaatgttgccgttgggaatttgtggcttacatggcagTCTGGTTACGAGCGCTTGTGTTGTTTGCGGTGTATTCAACCCCGTGATCACAACTATGGAACAACATGTGTATGCCGGGTGCCCAAGCATCTGCGAGAAG
                                         ggcttac  putative branch site (score: 3)
                  taatgtt  TA-rich tract