1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgcttctgccatggctctagtcaaattcgtgcgtgtatgttgtggatattcacaccataaaacgtaagccttgaggacgatttgtaggtttgagacgtgccgaattgtttggtgattcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAGACATCCACGCCGGAATTATCACGCATTCGGGCTCCAAGAAAAGGTGGA
species | Physcomitrella patens |
transcript | PP1S138_43V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|18347417|gb|BJ179463.1|BJ179463
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTEST: gi|208389033|gb|DC937366.1|DC937366
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGT
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|208397502|gb|DC908322.1|DC908322
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|208353132|gb|DC913890.1|DC913890
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|100385660|gb|BY987725.1|BY987725
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACTCAATCACGTTGGTGGAAAEST: gi|208358936|gb|DC939220.1|DC939220
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|100429318|gb|BY978050.1|BY978050
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|100436724|gb|BY979494.1|BY979494
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|208391614|gb|DC938227.1|DC938227
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|208384210|gb|DC911304.1|DC911304
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|18349770|gb|BJ181820.1|BJ181820
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAAEST: gi|208367215|gb|DC935819.1|DC935819
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|18362193|gb|BJ194262.1|BJ194262
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAEST: gi|208389798|gb|DC937433.1|DC937433
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
tgaggacgatttgtaggtttgagacgtgccgaattgtttggtgattcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAGACATCCACGCCGGAATTATCACGCATTCGGGCTCCAAGAAAAGGTGGA
ttcctgt CT-rich tract
aattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcttctgccatggctctagtcaaattcgtgcgtgtatgttgtggatattcacaccataaaacgtaagccttgaggacgatttgtaggtttgagacgtgccgaattgtttggtgattcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAAGACATCCACGCCGGAATTATCACGCATTCGGGCTCCAAGAAAAGGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA