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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacgtcaactttctcccaaattttacagtctttggggtttagggttttgttagaattggttagacttgtgtctgttaactcacagtgttctggtgtgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC

Basic information

species Physcomitrella patens
transcript PP1S136_220V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S136_220V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv08s0105g00280.t01 (Vitis vinifera), 3'ss of exon 2
----------gtatgacgt-caactttctcccaaattttacagtctttggggtttagggttttgttagaattggttagacttgtgtctgttaactcacagtgttctggtgtgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC
           | |||  | |   ||||| |  | |     | |  |  |  ||    |||||  |  |||  | ||   |  ||| | |    |   | | |  | |||      ||||||||||||||| |||||||||||||  || ||||| || ||  |||| |||||    |||||||||||
gtctttttttatttgatattctgttttcttctcagtcgattaattctatgttttcttagtttt-ctgtaatgtgataatttcatgtttttctggtttgaatttgattgtg------acagGCTCTGGGTATTAAGGGTAAGATGTTTGCAAAGAAACGTTATGCAGAAAAGGCGCAGATGAAGAAAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429205|gb|BY977993.1|BY977993
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|18356860|gb|BJ188919.1|BJ188919
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100352388|gb|BY983183.1|BY983183
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208393325|gb|DC903999.1|DC903999
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208351521|gb|DC909979.1|DC909979
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162208445|gb|FC384408.1|FC384408
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162168874|gb|FC345348.1|FC345348
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|67507874|gb|BJ940750.1|BJ940750
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162271254|gb|FC447191.1|FC447191
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162273379|gb|FC449828.1|FC449828
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208387752|gb|DC941321.1|DC941321
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100399380|gb|BY954341.1|BY954341
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100375740|gb|BY968173.1|BY968173
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|18356553|gb|BJ188612.1|BJ188612
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100402534|gb|BY954883.1|BY954883
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100440241|gb|BY962134.1|BY962134
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100411094|gb|BY956321.1|BY956321
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|18352296|gb|BJ184350.1|BJ184350
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162199735|gb|FC375974.1|FC375974
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162241862|gb|FC418117.1|FC418117
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100396887|gb|BY953877.1|BY953877
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208365753|gb|DC935808.1|DC935808
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100437696|gb|BY979783.1|BY979783
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208344530|gb|DC905091.1|DC905091
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208390066|gb|DC938121.1|DC938121
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|18351604|gb|BJ183656.1|BJ183656
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208385275|gb|DC915075.1|DC915075
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAANATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100380682|gb|BY986734.1|BY986734
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208375393|gb|DC940475.1|DC940475
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208391122|gb|DC942062.1|DC942062
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100392655|gb|BY971818.1|BY971818
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208373470|gb|DC941067.1|DC941067
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|67576486|gb|BJ949310.1|BJ949310
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162184429|gb|FC359175.1|FC359175
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162234658|gb|FC410404.1|FC410404
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|208369176|gb|DC936033.1|DC936033
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100361629|gb|BY966146.1|BY966146
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100447434|gb|CJ971733.1|CJ971733
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCANGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|18363960|gb|BJ196033.1|BJ196033
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100366881|gb|BY948257.1|BY948257
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162274757|gb|FC450511.1|FC450511
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162155077|gb|FC330871.1|FC330871
EST:     TAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: TAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100415702|gb|BY992962.1|BY992962
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|162212960|gb|FC389176.1|FC389176
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100425001|gb|BY976922.1|BY976922
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
EST: gi|100392894|gb|BY989661.1|BY989661
EST:     GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAG                         GCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG
genomic: GCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 33 (downstream exon)
Score: 34

CTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAACGGGCGGCCTTCGCCCAGAAGgtatgacgtc ... tgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaattggttagacttgtgtctgttaactcacagtgttctggtgtgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC
                          aactcac  putative branch site (score: 34)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgacgtcaactttctcccaaattttacagtctttggggtttagggttttgttagaattggttagacttgtgtctgttaactcacagtgttctggtgtgggttacagGCTCTGGGTATCAAGGGTAAGATGTACGCGAAGAAGCGGTACTCAGAGAAGGCTACCATGAAGAAAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA