Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTTTCAGTTCCCCGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTTAACAA

Basic information

species Physcomitrella patens
transcript PP1S136_175V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggc--agGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTTTCAGTTCCCCGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTTAACAA
                                              || | |  | | ||||    |||||   || |   || |   | | |   ||||  | |||     |  | ||| | | |  ||||   ||||||||||||| | |||||||| |||||||||||| | ||||| ||||| ||  | || ||  ||| ||  || ||| | || ||||||||||||   ||
----------------------------------------------gtatgttggtg-cattttcgttaaccttgctctgattcg-acctttttttgtttctatgatatcaatttgatgattctctgtttggtttagGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTCAAATTTCCTCAGGACAGTGTTGAGCTTTATGCTGAGAAGGTTGCTAA

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ31296 (Selaginella moellendorffii), 3'ss of exon 2
gtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTTTCAGTTCCCCGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTTAACAA
                                                                                    || |  |     ||||  |||   ||   |    |   |  ||| |   ||| || ||||| ||  | ||| ||||  | || ||||| || |||||||||||   |||||||||| ||||||||||| |||| || |||||||| |||||
------------------------------------------------------------------------------------gtaaactcctctgtttctagg-cggattcactcagtaagctttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 2
gtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTTTCAGTTCCCCGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTTAACAA
                                                                            |  | ||     |   |     | || ||||| |  |||  | |  |  ||| |   ||| || ||||| ||  | ||| ||||  | || ||||| || |||||||||||   |||||||||| ||||||||||| |||| || |||||||| |||||
----------------------------------------------------------------------------gtaaatt-----cccctgtttctaggcggattcacttag--taaaagctttgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 2
gtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTTTCAGTTCCCCGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTTAACAA
                                                                            |  | ||     | | |     | || ||||| |  |||  | ||  |  || |   ||| || ||||| ||  | ||| ||||  | || ||||| || |||||||||||   |||||||||| ||||||||||| |||| || |||||||| |||||
----------------------------------------------------------------------------gtaaatt-----cctctgtttctaggcggattcacttag--taagctt--tgattctagGCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 2
gtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTTTCAGTTCCCCGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTTAACAA
                                                                            |  | ||     | | |     | || ||||| |  |||  | ||  |  || |   ||| || ||||| ||  | ||| ||||| | || ||||| || |||||||||||   |||||||||| ||||||||||| |||| || |||||||| |||||
----------------------------------------------------------------------------gtaaatt-----cctctgtttctgggcggattcacttag--taagctt--tgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18341601|gb|BJ173636.1|BJ173636
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18342317|gb|BJ174352.1|BJ174352
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18348091|gb|BJ180138.1|BJ180138
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162238741|gb|FC419052.1|FC419052
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|100353473|gb|BY964824.1|BY964824
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18328942|gb|BJ160948.1|BJ160948
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162265655|gb|FC441618.1|FC441618
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|37823786|gb|BJ581852.1|BJ581852
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162258820|gb|FC434827.1|FC434827
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18328002|gb|BJ160006.1|BJ160006
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162267778|gb|FC443768.1|FC443768
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162258819|gb|FC434826.1|FC434826
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|37824033|gb|BJ582099.1|BJ582099
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18341560|gb|BJ173595.1|BJ173595
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|37830179|gb|BJ588191.1|BJ588191
EST:     GTACCGAGATCATCATCCGCGCTANCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: GTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18344831|gb|BJ176872.1|BJ176872
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162280359|gb|FC456064.1|FC456064
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162265654|gb|FC441617.1|FC441617
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18332204|gb|BJ164217.1|BJ164217
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|37821437|gb|BJ579503.1|BJ579503
EST:     CATGCGT-CCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18332244|gb|BJ164257.1|BJ164257
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18344586|gb|BJ176627.1|BJ176627
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|67719851|gb|BJ970110.1|BJ970110
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162280358|gb|FC456063.1|FC456063
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|37827462|gb|BJ585474.1|BJ585474
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18337153|gb|BJ169177.1|BJ169177
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|100444204|gb|BY964102.1|BY964102
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|18336232|gb|BJ168254.1|BJ168254
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|208375019|gb|DC956415.1|DC956415
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|67728112|gb|BJ978371.1|BJ978371
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|162238740|gb|FC419051.1|FC419051
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: gi|208386351|gb|DC932847.1|DC932847
EST:     CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG                         GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 34 (downstream exon)
Score: 19

CGCGAGCTCGCTGAAGATGGTTACTCTGGCGTGGAGGTGCGTGTCACCCCCATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTTTCAGTTCCCCGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTTAACAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTTTCAGTTCCCCGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTTAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG