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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttcgtcgctccagtatttcgtgtctaccggttcaagctcaccttttatgctttttacttcatgccgttcattaagcgcggaattctaatgtggccacattctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAATGGATTCGGACGTATCGGACGCAACTTCGTCCGCTGCTGGC

Basic information

species Physcomitrella patens
transcript PP1S135_29V6.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S135_29V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G12900.3 (Arabidopsis thaliana), 3'ss of exon 2
-----------------------------------------------------------------gtacgtttcgtcgct----ccagtatttcgtgtctaccggttcaagctcaccttttatgctttttacttcatgccgt---------tcattaagcgcgga-attctaatgtggccacattctgatgcagGCTGCTAGCTCTGGAGC---TAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAATGGATTCGGACGTATCGGACGCAACTTCGTCCGCTGCTGGC
                                                                 |||   |     |||    |  || | |  || | |||  |  |     | |  | |||       || |||| | |         | ||||| |    |  || |  | |     |  | || || ||      |||  ||| |     | ||  |  || |||||||||||||| ||||| ||||||||||| |||||  | || ||  | |||||| |  | || |   
gtgagttcctttttcacccactcctctctattgctcctgtgttatatatcttatggtgcaatcttgtaaactcaagagctgtttcttgtgtctaatgcc-accattgtagatctatccatgatgaacaaggctgcatggcatgatcagccatgattaaccatatacgttttttttttctgtctctgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAGGTAGCCATCAATGGGTTCGGTAGGATTGGTAGGAACTTCTTGAGGTGTT---

upper sequence: PP1S135_29V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ13677 (Selaginella moellendorffii), 3'ss of exon 2
gtacgtttcgtcgctccagtatttcgtgtctaccggttcaagctcaccttttatgctttttacttcatgccgttcattaagcgcggaattctaatgtggccacattctga-tgcagGCTGCTAGCTCTGG---AGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAATGGATTCGGACGTATCGGACGCAACTTCGTCCGCTGCTGGC
                                                ||  |    || |  |  ||  | ||  |         | ||  | | | |   |  |  || || ||| | | ||||||||   ||| ||| | || ||  |||||||||||||||| ||||| ||||||||||| ||| | || || || |||||| |||||||||   
----------------------------------------------gtttgaaaatcttctcgtctatcgcttttctcccctttctactttcattatagatgctatgagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT---

upper sequence: PP1S135_29V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ29227 (Selaginella moellendorffii), 3'ss of exon 2
gtacgtttcgtcgctccagtatttcgtgtctaccggttcaagctcaccttttatgctttttacttcatgccgttcattaagcgcggaattctaatgtggccacattctga-tgcagGCTGCTAGCTCTGG---AGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAATGGATTCGGACGTATCGGACGCAACTTCGTCCGCTGCTGGC
                                   |||  |    |   ||   |  | |  |||    ||  |   ||         ||  | | | |   |  |  || || ||| | | ||||||||   ||| ||| | || ||  |||||||||||||||| ||||| ||||||||||| ||| | || || || |||||| |||||||||   
-----------------------------------gtttgaa---aatcttcgcgtctatcgcttttctcccctttctac--------tttcattatagatgctatgagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100447177|gb|CJ971476.1|CJ971476
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100445756|gb|CJ970055.1|CJ970055
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100390360|gb|BY952768.1|BY952768
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100391109|gb|BY953119.1|BY953119
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100409716|gb|BY956070.1|BY956070
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100425701|gb|BY958727.1|BY958727
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100356872|gb|BY965321.1|BY965321
EST:     GCAAGCACCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100376420|gb|BY986158.1|BY986158
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162265993|gb|FC442684.1|FC442684
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18328351|gb|BJ160355.1|BJ160355
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100443635|gb|BY963732.1|BY963732
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100355307|gb|BY965096.1|BY965096
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100447310|gb|CJ971609.1|CJ971609
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100413327|gb|BY956617.1|BY956617
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|208400254|gb|DC908915.1|DC908915
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100448385|gb|CJ972684.1|CJ972684
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100443711|gb|BY963808.1|BY963808
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|208393257|gb|DC942425.1|DC942425
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100354988|gb|BY964942.1|BY964942
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100430110|gb|BY978252.1|BY978252
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|208399830|gb|DC904702.1|DC904702
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100436669|gb|BY979466.1|BY979466
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100424423|gb|BY958477.1|BY958477
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100388562|gb|BY952164.1|BY952164
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100410119|gb|BY974420.1|BY974420
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100446725|gb|CJ971024.1|CJ971024
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100428077|gb|BY959271.1|BY959271
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100384962|gb|BY969697.1|BY969697
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100437565|gb|BY979716.1|BY979716
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100438868|gb|BY961844.1|BY961844
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18367806|gb|BJ199889.1|BJ199889
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100359836|gb|BY947146.1|BY947146
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100356849|gb|BY965310.1|BY965310
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100412429|gb|BY974729.1|BY974729
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100443614|gb|BY963711.1|BY963711
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18361914|gb|BJ193981.1|BJ193981
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18326252|gb|BJ158251.1|BJ158251
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100393240|gb|BY989791.1|BY989791
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100358917|gb|BY946753.1|BY946753
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162230022|gb|FC405962.1|FC405962
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162185629|gb|FC361522.1|FC361522
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162256440|gb|FC432471.1|FC432471
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100389987|gb|BY989067.1|BY989067
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100372544|gb|BY985650.1|BY985650
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100425409|gb|BY958580.1|BY958580
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100377629|gb|BY986333.1|BY986333
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162161224|gb|FC337287.1|FC337287
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100370184|gb|BY985284.1|BY985284
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100422878|gb|BY958044.1|BY958044
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100361976|gb|BY947721.1|BY947721
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|208384289|gb|DC903356.1|DC903356
EST:     GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTG                         GTTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: GCAAGCGCCATGACGACCTAACTACTATTGTTACTGCCCAGTCTGCCGTGgtacgtttcg ... tctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttcatgccgttcattaagcgcggaattctaatgtggccacattctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAATGGATTCGGACGTATCGGACGCAACTTCGTCCGCTGCTGGC
                          aattctaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtttcgtcgctccagtatttcgtgtctaccggttcaagctcaccttttatgctttttacttcatgccgttcattaagcgcggaattctaatgtggccacattctgatgcagGCTGCTAGCTCTGGAGCTAAGAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAATGGATTCGGACGTATCGGACGCAACTTCGTCCGCTGCTGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT