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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC

Basic information

species Physcomitrella patens
transcript PP1S134_151V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 2
ttatacttttcagcac-ccttgttgttagggtgcctggattctatccatatgatatgtttagatg-tctagat-tttcggatgataatg----gacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
          ||  |    ||    |   | || |||  |    |    ||| | ||     ||  || | || ||  | || |  ||     |||||    | ||||| |||||||| |||||||| || ||| | ||||| |||||||||||||||||  ||||||||||||| ||||| ||||||||| ||||||||||||| |
-------agccaaaatgtattcacatgctgctgtctgattcacttttgaatgttttggccctataatccaaatattgtgcataactattttttgaccttgctttcagGGCTATGTGGTTTACCGTGTTCGCGTCAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATTACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
------ttatactt-ttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
      |   | || || | ||   |   |  |    |      ||| | ||| | | ||      | || |   | ||  |   |  |  |   | |   |  ||||| |||||||| ||||||||||||||  | ||||| |||||||||||||||||  ||||||||||||| || || ||||||||| |||||||||| || |
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcc-tgtaat----caaaatattgtgcttaactatttgtcgttaccttt--cctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatg-atatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
|  ||   |      || |  ||| |            | |  |     |  ||||||   ||| | |   |       || |   | |  ||| || ||||||||||| |||||||||||||||||    ||||| |||||||||||||| ||  ||||||||||||| ||||| ||||||||| |||||||||| || |
tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgat-tttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 2
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
 |  ||   ||       |    || |   ||| | ||     | ||      |  |||   |   |      || ||   |  ||    |    | ||||| ||||| || |||||||||||||||   ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||||||| |||||||||| || |
atgaacaactcgtacttgtctgagtaataatgcattgaactagttcactctgaaaatttgagtagttgctgggtctgaacgttgtgttatttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
------ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgt-ttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
      || ||||| || | |         ||    | | | | ||  |    |    ||  |  | | || |  | | |   ||   |  ||    |    | ||||| ||||| || ||||| ||||||||  | ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||||||| |||||||||| || |
aacagcttgtacttgtctgtaatgc----attgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtct---gaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 2
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactg---cagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC-----------------------------
                               |  || | | | ||  | | ||   || |  |   |   | ||    ||    ||   ||  | |    ||||| ||||| || ||||||||||||||  | ||||| |||||||||||||| ||  | || |||||||| ||||| ||||| ||| |||||||||| || |                             
-------------------------------gattgtact-tgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagggttatgttgtttaccgtgtccgtgttagGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCCAGCTCAAGTTCCAGAGGAACAAGAGGTCT

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaact---gcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
  ||| ||| |||       || |   |      | |    | ||  | | ||   || |  |   |   | ||    ||    ||   ||  | |    ||||| ||||| || ||||||||||||||  | ||||| |||||||||||||| ||  | || |||||||| ||||| ||||| ||| |||||||||| || |
-gatagttt-cagt-tttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G466136_T01 (Zea mays), 3'ss of exon 1
-----------ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
           |||  ||| |   |    || || |||  |    | || |  | | || | ||   ||||  ||     || ||    || ||||     | | || ||||| ||||| || |||| |||||||||  | ||||| ||||||||||||||  |  ||||| ||||||| ||||| ||||| ||| |||||||||| || |
agtatgctatgttaggcttgtttactttatt-ttattattgcagtttgagt--acctatgtcatgattttatttgatgttatgtt---gtggtaat-----ttatcttcagGGTTATGTTGTGTACCTTGTCCGTGTGAGACGTGGTGGCAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 2
--ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
   | | || || |      |   || | | |   ||  |||   ||  |      |   ||    | |  || | ||  |     |  ||      | ||||| |||||| |||| ||||| |||||  | || || || ||||||||||||||  | ||||||||||||||||| |||||||  ||||| ||| | || |
tgattttctgtttacatttttccctgctggtgc-tctatatttagtcactgcagcgttaatattcatattaatat-cgtgtacatgttaacaatcttttcagGGTTATGTGATCTATCGTGTACGTGTAAGACGCGGTGGAAGGAAGAGGCCAGTCCCAAAGGGTATTGTGTATGGTAAGCCCACAAACCAAGGTGTCACTC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
---ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcg-gatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
   ||| | || | |  | |       |||   ||    |     ||| | | |||   | |   |   | |||| |   |   |  |      || | |  |||| |||||  |||| ||||| |||||  | ||||| ||  |||||||||| ||| ||||||| ||||| ||||||||||| |  ||||||||| | || |
tgtttaaaattatgacaaactggcccattaatttgataag----catcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 2
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
                                  |  | | | ||| |      ||| | | |  ||   |  |||  |  |  | ||   |     |||||||| || ||||||||||||||||| || || || ||| | |||||||||||  ||||||| ||||| |||||||||||||||||||||||||| || |
---------------------------------gtaaaatttctcctttcttcgtgtgt-gctagctctttgatcgtttcgtgctcgaatcc--tcacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTCTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 2
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
                                  |  | | | ||| |      ||| | | |  ||   |  |||  |  |  | ||   |     |||||||| || ||||||||||||||||| || || || ||| | |||||||||||| ||||||| ||||| |||||||||||||||||||||||||| || |
---------------------------------gtaaaatttctcctttcttcgtgtgt-gctagctctttgatcgtttcgtgctcgaatcc--tcacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTTTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18372242|gb|BJ203844.1|BJ203844
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67709530|gb|BJ965346.1|BJ965346
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162261579|gb|FC437596.1|FC437596
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162255208|gb|FC431518.1|FC431518
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18372011|gb|BJ203613.1|BJ203613
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|37828653|gb|BJ586665.1|BJ586665
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208391739|gb|DC937957.1|DC937957
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162230273|gb|FC406629.1|FC406629
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|37851837|gb|BJ609845.1|BJ609845
EST:     ACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: ACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162234474|gb|FC409505.1|FC409505
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67709503|gb|BJ965319.1|BJ965319
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162272999|gb|FC449130.1|FC449130
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162230274|gb|FC406630.1|FC406630
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67704003|gb|BJ964236.1|BJ964236
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCG
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCG
EST: gi|162259234|gb|FC436164.1|FC436164
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|100358463|gb|BY983918.1|BY983918
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67703713|gb|BJ963946.1|BJ963946
EST:     GCCCTAGCCGCCCTGACGAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162218935|gb|FC395167.1|FC395167
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162203968|gb|FC380260.1|FC380260
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162203967|gb|FC380259.1|FC380259
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67704640|gb|BJ964873.1|BJ964873
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162226970|gb|FC403340.1|FC403340
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162264718|gb|FC440285.1|FC440285
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67727062|gb|BJ977321.1|BJ977321
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67718614|gb|BJ968873.1|BJ968873
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18371655|gb|BJ203257.1|BJ203257
EST:     GCCCTATCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGANGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67702581|gb|BJ962814.1|BJ962814
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|100404702|gb|BY991240.1|BY991240
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18349690|gb|BJ181740.1|BJ181740
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67704189|gb|BJ964422.1|BJ964422
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67702172|gb|BJ962405.1|BJ962405
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67704315|gb|BJ964548.1|BJ964548
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67570164|gb|BJ942988.1|BJ942988
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67704257|gb|BJ964490.1|BJ964490
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162217804|gb|FC394104.1|FC394104
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208396429|gb|DC920081.1|DC920081
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208352427|gb|DC906196.1|DC906196
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162264717|gb|FC440284.1|FC440284
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67576109|gb|BJ948933.1|BJ948933
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67717597|gb|BJ967856.1|BJ967856
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|37826884|gb|BJ584896.1|BJ584896
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|37842969|gb|BJ600977.1|BJ600977
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67727044|gb|BJ977303.1|BJ977303
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162234473|gb|FC409504.1|FC409504
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67718636|gb|BJ968895.1|BJ968895
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18350515|gb|BJ182566.1|BJ182566
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162261580|gb|FC437597.1|FC437597
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67720668|gb|BJ970927.1|BJ970927
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208368005|gb|DC951016.1|DC951016
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67702445|gb|BJ962678.1|BJ962678
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAG
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAG
EST: gi|7047276|gb|AW477170.1|AW477170
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67692800|gb|BJ953033.1|BJ953033
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162226969|gb|FC403339.1|FC403339
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18347801|gb|BJ179848.1|BJ179848
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|37852815|gb|BJ610823.1|BJ610823
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|100429626|gb|BY959657.1|BY959657
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67699601|gb|BJ959834.1|BJ959834
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162245469|gb|FC424062.1|FC424062
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67726111|gb|BJ976370.1|BJ976370
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162245468|gb|FC424061.1|FC424061
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208383809|gb|DC903565.1|DC903565
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208346508|gb|DC917461.1|DC917461
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67569531|gb|BJ942355.1|BJ942355
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18359406|gb|BJ191467.1|BJ191467
EST:     GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAG                         GGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 33 (downstream exon)
Score: 44

TGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGGCATTGTCCGCGTCACCCGCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttgg ... tcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC
      atatgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC

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