1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cttctcacagtatatcttgcggaaggtttcgtggatggtattttgaacatgttgaagttagaggatgaccggttcaatgccctgtcttgtcttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAGTCGGAGCCTACCGAACAGAG
species | Physcomitrella patens |
transcript | PP1S132_95V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|100356048|gb|BY946170.1|BY946170
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|100380016|gb|BY968804.1|BY968804
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|18351892|gb|BJ183944.1|BJ183944
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|100446010|gb|CJ970309.1|CJ970309
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|100390341|gb|BY952749.1|BY952749
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGTACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|208390390|gb|DC933435.1|DC933435
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|100448896|gb|CJ973195.1|CJ973195
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGACCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|100355096|gb|BY965000.1|BY965000
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTNANNCAACAAGGATCCAAGNTCCATEST: gi|162267156|gb|FC443387.1|FC443387
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTT-A--CAACAAGGATCCAAG-TCCAT
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|100417339|gb|BY957283.1|BY957283
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|18365276|gb|BJ197350.1|BJ197350
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|208344839|gb|DC912673.1|DC912673
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|208397779|gb|DC912002.1|DC912002
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|208352476|gb|DC910190.1|DC910190
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|18361573|gb|BJ193639.1|BJ193639
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|208384190|gb|DC911298.1|DC911298
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|18371678|gb|BJ203280.1|BJ203280
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGANCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|18332250|gb|BJ164263.1|BJ164263
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAEST: gi|162263809|gb|FC438428.1|FC438428
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
EST: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGG GTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
genomic: CCTCTGTGTTTGAGCACGTTCAGCAAGCACCCGAGGATCCCATTTTGGGGgtatgtccct ... cttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGA
aacatgttgaagttagaggatgaccggttcaatgccctgtcttgtcttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAGTCGGAGCCTACCGAACAGAG
ccctgtcttgtctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctcacagtatatcttgcggaaggtttcgtggatggtattttgaacatgttgaagttagaggatgaccggttcaatgccctgtcttgtcttgtcatagGTAACAGTGGCTTACAACAAGGATCCAAGTCCATTGAAGGTGAACCTTGGAGTCGGAGCCTACCGAACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa