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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtaaggattctcagtggcgttctggtcttatggtgttatcatctcgtgacgcttctgttgtttcttttttcttatttggactcgactctttgtgcagCATATGTATCTTCTTCCTCGCAAAAGAGGGTGATAACTGCTGCCTAACACCAGTGAAACCCGATGCCTTCATGCCGGTGCGATCAGAATTTGAGAAAGGG

Basic information

species Physcomitrella patens
transcript PP1S131_9V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195102|gb|FC371377.1|FC371377
EST:     CCGGGTTCCTACCTGGTGGCTTTCTCTTTCGATGCTACCGTTGATGGAAG                         CATATGTATCTTCTTCCTCGCAAAAGAGGGTGATAACTGCTGCCTAACACC
genomic: CCGGGTTCCTACCTGGTGGCTTTCTCTTTCGATGCTACCGTTGATGGAAGgtcagctctt ... ctttgtgcagCATATGTATCTTCTTCCTCGCAAAAGAGGGTGATAACTGCTGCCTAACACC
EST: gi|162169160|gb|FC345127.1|FC345127
EST:     GTGGCTTTCTCTTTCGATGCTACCGTTGATGGAAG                         CATATGTATCTTCTTCCTCGCAAAAGAGGGTGATAACTGCTGCCTAACACC
genomic: GTGGCTTTCTCTTTCGATGCTACCGTTGATGGAAGgtcagctctt ... ctttgtgcagCATATGTATCTTCTTCCTCGCAAAAGAGGGTGATAACTGCTGCCTAACACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgtgacgcttctgttgtttcttttttcttatttggactcgactctttgtgcagCATATGTATCTTCTTCCTCGCAAAAGAGGGTGATAACTGCTGCCTAACACCAGTGAAACCCGATGCCTTCATGCCGGTGCGATCAGAATTTGAGAAAGGG
                                           ctctttgt  CT-rich tract
                  tttcttttttcttatt  TA-rich tract