1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cagtgtaggcttgacatagcattgggggctggctgtggtgattttagagttttgtgcaacgttgatagtagtgattaatgttaaaatgtcttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATAATTTCGGAGAGCTTCTTGCTCATCCCATT
species | Physcomitrella patens |
transcript | PP1S131_74V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|22133353|gb|BQ827693.1|BQ827693
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|208374842|gb|DC956115.1|DC956115
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|162243863|gb|FC423180.1|FC423180
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: GAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|208344424|gb|DC916761.1|DC916761
genomic: GAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|162230348|gb|FC406912.1|FC406912
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: GAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCCTTGTTGGGGAACAATATTTAEST: gi|162243433|gb|FC425129.1|FC425129
genomic: GAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGG-CCTTGTTGGGGAACAATATTTA
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|208359725|gb|DC946601.1|DC946601
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|162243434|gb|FC425130.1|FC425130
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|208392191|gb|DC957270.1|DC957270
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATEST: gi|208357810|gb|DC918600.1|DC918600
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
EST: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTG GATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
genomic: TGTACTTGGCTTACACCTCTGTGGAAACATTGTCGGAAGACTTCAAGCTGgtttgtacct ... ttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTAT
agagttttgtgcaacgttgatagtagtgattaatgttaaaatgtcttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATAATTTCGGAGAGCTTCTTGCTCATCCCATT
gattaat putative branch site (score: 3)
tgattaatgttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgtaggcttgacatagcattgggggctggctgtggtgattttagagttttgtgcaacgttgatagtagtgattaatgttaaaatgtcttgagtgcagGATCTAGCATTTGATCTATCACTGGCGGCCTTGTTGGGGAACAATATTTATAATTTCGGAGAGCTTCTTGCTCATCCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT