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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgatgcttaacgacctattttaacagctggtttgaaactactatttcggattgcatcttgtaatggaagagcctctcgcaccatgttcatcatcagaccgccattgttttgtgcgcaataatgttcattgcgagatgttgcagGGGCGCATGTGGATCGAGCAGGCATAGACATATGTCTGGTAGGGGACTCAGTGGGTATGGTTGTGCATGGGCATGACACAACGCTGCCAGTCACAATGGA

Basic information

species Physcomitrella patens
transcript PP1S130_272V6.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100398300|gb|BY972535.1|BY972535
EST:     TCAAACGAATCAGCCCATCACGATGGTAACTGCGTATGATTATCCCTCCG                         GGGCGCATGTGGATCGAGCAGGCATAGACATATGTCTGGTAGGGGACTCAG
genomic: TCAAACGAATCAGCCCATCACGATGGTAACTGCGTATGATTATCCCTCCGgtgagtgatg ... gatgttgcagGGGCGCATGTGGATCGAGCAGGCATAGACATATGTCTGGTAGGGGACTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatcagaccgccattgttttgtgcgcaataatgttcattgcgagatgttgcagGGGCGCATGTGGATCGAGCAGGCATAGACATATGTCTGGTAGGGGACTCAGTGGGTATGGTTGTGCATGGGCATGACACAACGCTGCCAGTCACAATGGA
                            aataatgtt  TA-rich tract