1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agttgctgtcagtgattattcctataccatattattacgctgattagtggaccatatttctcacgctgtagaaaatgagtgatctggtattgtgttgcagGTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTAGATGAGCTGGACAACTTACAAAAGCAAGCAGAGTTGACAGATCTGTACA
species | Physcomitrella patens |
transcript | PP1S125_77V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTGTTTAATAAACAAATGGAAATTTCAGCTCGCATTGAAAAAGTTCAG GTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTAEST: gi|100410339|gb|BY992057.1|BY992057
genomic: GTGTGTTTAATAAACAAATGGAAATTTCAGCTCGCATTGAAAAAGTTCAGgttggtattg ... tgtgttgcagGTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTA
EST: TTAATAAACAAATGGAAATTTCAGCTCGCATTGAAAAAGTTCAG GTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTAEST: gi|162176698|gb|FC352543.1|FC352543
genomic: TTAATAAACAAATGGAAATTTCAGCTCGCATTGAAAAAGTTCAGgttggtattg ... tgtgttgcagGTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTA
EST: GTGTGTTTAATAAACAAATGGAAATTTCAGCTCGCATTGAAAAAGTTCAG GTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTA
genomic: GTGTGTTTAATAAACAAATGGAAATTTCAGCTCGCATTGAAAAAGTTCAGgttggtattg ... tgtgttgcagGTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTA
agtggaccatatttctcacgctgtagaaaatgagtgatctggtattgtgttgcagGTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTAGATGAGCTGGACAACTTACAAAAGCAAGCAGAGTTGACAGATCTGTACA
ttctcac putative branch site (score: 12)
atatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgctgtcagtgattattcctataccatattattacgctgattagtggaccatatttctcacgctgtagaaaatgagtgatctggtattgtgttgcagGTTGGACTTGAGAGCGCGACTGATGATATGGATCTCATGGCACGCTTATTAGATGAGCTGGACAACTTACAAAAGCAAGCAGAGTTGACAGATCTGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG